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[ESPResSo-users] visualization problem

From: Narges Nikoofard
Subject: [ESPResSo-users] visualization problem
Date: Tue, 24 Jun 2014 12:00:27 +0430

Dear all,

I am simulating a system composed of around 60 polymers in a simulation box of length 20. In this system, many polymers cross the boundary and some of their monomers appear from the other side of the box. As a result, the bonds are stretched across the simulation box, which makes a mess in the visualization.

I wonder if there is a way to tell VMD not to show the bonds between the monomers (specially bonds that are stretched across the simulation box). I would be grateful if someone could kindly help me in this matter.

Many thanks,
Narges Nikoofard

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