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[ESPResSo-users] find aggregates

From: Narges Nikoofard
Subject: [ESPResSo-users] find aggregates
Date: Wed, 24 Jun 2015 16:33:22 +0430

Dear all,

I am studying the self-assembly of amphiphilic polymers. I use the "analyze aggregation" command to find the aggregates.

Although I see in VMD that there are several free polymers and two micelles in the system, the command gives all molecules in one aggregate. I have checked different values for dist_criteria.

The code is attached to this email. I would be grateful if someone could kindly help me in this issue.

Many thanks in advance,
Narges Nikoofard

Attachment: amphiphiles.tcl
Description: Tcl script

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