This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by ESPResSo configure 3.3.0-2099-gbeb1108, which was generated by GNU Autoconf 2.63. Invocation command line was $ ../configure --with-mpi=yes --with-fftw=yes --with-cuda=/opt/cudatoolkit-7.5 --with-boost=/usr/local/tools/boost-mpi-1.55.0 ## --------- ## ## Platform. ## ## --------- ## hostname = surface86 uname -m = x86_64 uname -r = 2.6.32-573.26.1.1chaos.ch5.4.x86_64 uname -s = Linux uname -v = #1 SMP Wed May 4 15:27:57 PDT 2016 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /opt/cudatoolkit-7.5/open64/bin PATH: /opt/cudatoolkit-7.5/bin PATH: /usr/local/tools/mvapich2-gnu-debug-1.7/bin PATH: /usr/apps/gnu/4.9.3/bin PATH: /usr/local/tools/ld-auto-rpath/bin PATH: /usr/local/tools/boost-mpi-1.55.0/bin PATH: /usr/local/tools/openmpi-gnu-debug-1.4.3/bin PATH: /usr/lib64/qt-3.3/bin PATH: /usr/local/bin PATH: /bin PATH: /usr/bin PATH: /usr/local/sbin PATH: /usr/sbin PATH: /sbin PATH: /usr/global/tools/totalview/m/surface/default/bin PATH: /collab/usr/global/tools/git/chaos_5_x86_64_ib/git-2.0.0/bin PATH: . ## ----------- ## ## Core tests. ## ## ----------- ## configure:2244: checking build system type configure:2262: result: x86_64-unknown-linux-gnu configure:2284: checking host system type configure:2299: result: x86_64-unknown-linux-gnu configure:2321: checking target system type configure:2336: result: x86_64-unknown-linux-gnu configure:2383: checking for a BSD-compatible install configure:2451: result: /usr/bin/install -c configure:2462: checking whether build environment is sane configure:2522: result: yes configure:2663: checking for a thread-safe mkdir -p configure:2702: result: /bin/mkdir -p configure:2715: checking for gawk configure:2731: found /bin/gawk configure:2742: result: gawk configure:2753: checking whether make sets $(MAKE) configure:2775: result: yes configure:2852: checking how to create a ustar tar archive configure:2865: tar --version tar (GNU tar) 1.23 Copyright (C) 2010 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later . This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Written by John Gilmore and Jay Fenlason. configure:2868: $? = 0 configure:2908: tardir=conftest.dir && eval tar --format=ustar -chf - "$tardir" >conftest.tar configure:2911: $? = 0 configure:2915: tar -xf - &5 g++ (GCC) 4.9.3 Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3338: $? = 0 configure:3345: mpic++ -v >&5 mpicxx for MVAPICH2 version 1.7 Using built-in specs. Reading specs from /usr/apps/gnu/4.9.3/lib64/gcc/x86_64-unknown-linux-gnu/specs COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../libexec/gcc/x86_64-unknown-linux-gnu/4.9.3/lto-wrapper Target: x86_64-unknown-linux-gnu Configured with: ../gcc-4.9.3/configure --libdir=/usr/apps/gnu/4.9.3/lib64 --prefix=/usr/apps/gnu/4.9.3 --with-mpfr-include=/usr/apps/gnu/4.9.3/include --with-mpfr-lib=/usr/apps/gnu/4.9.3/lib --with-libelf=/usr/apps/gnu/4.9.3 --disable-multilib --with-quad --with-gmp=/usr/apps/gnu/4.9.3/lib --enable-languages=c,c++,fortran,java,objc,go --enable-lto Thread model: posix gcc version 4.9.3 (GCC) configure:3349: $? = 0 configure:3356: mpic++ -V >&5 g++: error: unrecognized command line option '-V' configure:3360: $? = 1 configure:3383: checking for C++ compiler default output file name configure:3405: mpic++ conftest.cpp >&5 configure:3409: $? = 0 configure:3447: result: a.out configure:3466: checking whether the C++ compiler works configure:3476: ./a.out configure:3480: $? = 0 configure:3499: result: yes configure:3506: checking whether we are cross compiling configure:3508: result: no configure:3511: checking for suffix of executables configure:3518: mpic++ -o conftest conftest.cpp >&5 configure:3522: $? = 0 configure:3548: result: configure:3554: checking for suffix of object files configure:3580: mpic++ -c conftest.cpp >&5 configure:3584: $? = 0 configure:3609: result: o configure:3613: checking whether we are using the GNU C++ compiler configure:3642: mpic++ -c conftest.cpp >&5 configure:3649: $? = 0 configure:3666: result: yes configure:3682: checking dependency style of mpic++ configure:3792: result: gcc3 configure:3835: checking for function MPI_Init configure:3866: mpic++ -o conftest conftest.cpp >&5 configure:3873: $? = 0 configure:3892: result: yes configure:3903: checking for mpi.h configure:3926: mpic++ -c conftest.cpp >&5 configure:3933: $? = 0 configure:3938: result: yes configure:4023: checking for mpiexec configure:4041: found /usr/local/tools/openmpi-gnu-debug-1.4.3/bin/mpiexec configure:4054: result: /usr/local/tools/openmpi-gnu-debug-1.4.3/bin/mpiexec configure:4066: checking for the mympiexec user script configure:4106: result: /g/g14/ustach2/espresso/may2016/espressomd/build2/mympiexec.sh configure:4123: checking whether mpic++ can get a pretty function name configure:4151: mpic++ -c conftest.cpp >&5 configure:4158: $? = 0 configure:4318: result: __PRETTY_FUNCTION__ configure:4355: checking whether mpic++ supports C++11 features by default configure:4422: mpic++ -c conftest.cpp >&5 conftest.cpp:17:21: error: expected identifier before 'sizeof' static_assert(sizeof(int) <= sizeof(T), "not big enough"); ^ conftest.cpp:17:21: error: expected ',' or '...' before 'sizeof' conftest.cpp:17:63: error: ISO C++ forbids declaration of 'static_assert' with no type [-fpermissive] static_assert(sizeof(int) <= sizeof(T), "not big enough"); ^ conftest.cpp:24:20: warning: override controls (override/final) only available with -std=c++11 or -std=gnu++11 virtual void f() override {} ^ conftest.cpp:27:29: error: '>>' should be '> >' within a nested template argument list typedef check> right_angle_brackets; ^ conftest.cpp:30:13: error: expected constructor, destructor, or type conversion before '(' token decltype(a) b; ^ conftest.cpp:34:15: error: expected unqualified-id before '&&' token check_type&& cr = static_cast(c); ^ conftest.cpp:36:10: error: 'd' does not name a type auto d = a; ^ conftest.cpp:37:10: error: 'l' does not name a type auto l = [](){}; ^ conftest.cpp: In constructor 'use_l::use_l()': conftest.cpp:39:32: error: 'l' was not declared in this scope struct use_l { use_l() { l(); } }; ^ conftest.cpp: At global scope: conftest.cpp:47:9: error: expected unqualified-id before 'using' using member = typename T::member_type; ^ conftest.cpp:53:19: error: variable or field 'func' declared void void func(member*) {} ^ conftest.cpp:53:19: error: 'member' was not declared in this scope conftest.cpp:53:27: error: expected primary-expression before '>' token void func(member*) {} ^ conftest.cpp:53:29: error: expected primary-expression before ')' token void func(member*) {} ^ configure:4429: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | /* end confdefs.h. */ | | template | struct check | { | static_assert(sizeof(int) <= sizeof(T), "not big enough"); | }; | | struct Base { | virtual void f() {} | }; | struct Child : public Base { | virtual void f() override {} | }; | | typedef check> right_angle_brackets; | | int a; | decltype(a) b; | | typedef check check_type; | check_type c; | check_type&& cr = static_cast(c); | | auto d = a; | auto l = [](){}; | // Prevent Clang error: unused variable 'l' [-Werror,-Wunused-variable] | struct use_l { use_l() { l(); } }; | | // http://stackoverflow.com/questions/13728184/template-aliases-and-sfinae | // Clang 3.1 fails with headers of libstd++ 4.8.3 when using std::function because of this | namespace test_template_alias_sfinae { | struct foo {}; | | template | using member = typename T::member_type; | | template | void func(...) {} | | template | void func(member*) {} | | void test(); | | void test() { | func(0); | } | } | configure:4444: result: no configure:4455: checking whether mpic++ supports C++11 features with -std=c++11 configure:4524: mpic++ -c -std=c++11 conftest.cpp >&5 configure:4531: $? = 0 configure:4549: result: yes configure:4708: checking whether mpic++ understands -c and -o together configure:4736: mpic++ -std=c++11 -c conftest.cpp -o conftest2.o >&5 configure:4740: $? = 0 configure:4747: mpic++ -std=c++11 -c conftest.cpp -o conftest2.o >&5 configure:4751: $? = 0 configure:4759: result: yes configure:4854: checking for gcc configure:4870: found /usr/apps/gnu/4.9.3/bin/gcc configure:4881: result: gcc configure:5113: checking for C compiler version configure:5121: gcc --version >&5 gcc (GCC) 4.9.3 Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:5125: $? = 0 configure:5132: gcc -v >&5 Using built-in specs. Reading specs from /usr/apps/gnu/4.9.3/lib64/gcc/x86_64-unknown-linux-gnu/specs COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../libexec/gcc/x86_64-unknown-linux-gnu/4.9.3/lto-wrapper Target: x86_64-unknown-linux-gnu Configured with: ../gcc-4.9.3/configure --libdir=/usr/apps/gnu/4.9.3/lib64 --prefix=/usr/apps/gnu/4.9.3 --with-mpfr-include=/usr/apps/gnu/4.9.3/include --with-mpfr-lib=/usr/apps/gnu/4.9.3/lib --with-libelf=/usr/apps/gnu/4.9.3 --disable-multilib --with-quad --with-gmp=/usr/apps/gnu/4.9.3/lib --enable-languages=c,c++,fortran,java,objc,go --enable-lto Thread model: posix gcc version 4.9.3 (GCC) configure:5136: $? = 0 configure:5143: gcc -V >&5 gcc: error: unrecognized command line option '-V' gcc: fatal error: no input files compilation terminated. configure:5147: $? = 1 configure:5150: checking whether we are using the GNU C compiler configure:5179: gcc -c conftest.c >&5 configure:5186: $? = 0 configure:5203: result: yes configure:5212: checking whether gcc accepts -g configure:5242: gcc -c -g conftest.c >&5 configure:5249: $? = 0 configure:5350: result: yes configure:5367: checking for gcc option to accept ISO C89 configure:5441: gcc -c -g -O2 conftest.c >&5 configure:5448: $? = 0 configure:5471: result: none needed configure:5491: checking dependency style of gcc configure:5601: result: gcc3 configure:5616: checking for a sed that does not truncate output configure:5682: result: /bin/sed configure:5700: checking for grep that handles long lines and -e configure:5760: result: /bin/grep configure:5765: checking for egrep configure:5829: result: /bin/grep -E configure:5834: checking for fgrep configure:5898: result: /bin/grep -F configure:5933: checking for ld used by gcc configure:6000: result: /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/x86_64-unknown-linux-gnu/bin/ld configure:6009: checking if the linker (/collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/x86_64-unknown-linux-gnu/bin/ld) is GNU ld configure:6024: result: yes configure:6036: checking for BSD- or MS-compatible name lister (nm) configure:6085: result: /usr/apps/gnu/4.9.3/bin/nm -B configure:6203: checking the name lister (/usr/apps/gnu/4.9.3/bin/nm -B) interface configure:6210: mpic++ -c -std=c++11 conftest.cpp >&5 configure:6213: /usr/apps/gnu/4.9.3/bin/nm -B "conftest.o" configure:6216: output 0000000000000000 B some_variable configure:6223: result: BSD nm configure:6226: checking whether ln -s works configure:6230: result: yes configure:6238: checking the maximum length of command line arguments configure:6358: result: 3458764513820540925 configure:6375: checking whether the shell understands some XSI constructs configure:6385: result: yes configure:6389: checking whether the shell understands "+=" configure:6395: result: yes configure:6430: checking for /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/x86_64-unknown-linux-gnu/bin/ld option to reload object files configure:6437: result: -r configure:6506: checking for objdump configure:6522: found /usr/apps/gnu/4.9.3/bin/objdump configure:6533: result: objdump configure:6565: checking how to recognize dependent libraries configure:6761: result: pass_all configure:6821: checking for ar configure:6837: found /usr/apps/gnu/4.9.3/bin/ar configure:6848: result: ar configure:6926: checking for strip configure:6942: found /usr/apps/gnu/4.9.3/bin/strip configure:6953: result: strip configure:7025: checking for ranlib configure:7041: found /usr/apps/gnu/4.9.3/bin/ranlib configure:7052: result: ranlib configure:7142: checking command to parse /usr/apps/gnu/4.9.3/bin/nm -B output from gcc object configure:7260: mpic++ -c -std=c++11 conftest.cpp >&5 configure:7263: $? = 0 configure:7267: /usr/apps/gnu/4.9.3/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm configure:7270: $? = 0 configure:7324: mpic++ -o conftest -std=c++11 conftest.cpp conftstm.o >&5 configure:7327: $? = 0 configure:7365: result: ok configure:7461: mpic++ -c -std=c++11 conftest.cpp >&5 configure:7464: $? = 0 configure:8232: checking how to run the C preprocessor configure:8272: gcc -E conftest.c configure:8279: $? = 0 configure:8310: gcc -E conftest.c conftest.c:13:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:8317: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | /* end confdefs.h. */ | #include configure:8350: result: gcc -E configure:8379: gcc -E conftest.c configure:8386: $? = 0 configure:8417: gcc -E conftest.c conftest.c:13:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:8424: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | /* end confdefs.h. */ | #include configure:8464: checking for ANSI C header files configure:8494: gcc -c -g -O2 conftest.c >&5 configure:8501: $? = 0 configure:8600: gcc -o conftest -g -O2 conftest.c >&5 configure:8604: $? = 0 configure:8610: ./conftest configure:8614: $? = 0 configure:8632: result: yes configure:8656: checking for sys/types.h configure:8677: gcc -c -g -O2 conftest.c >&5 configure:8684: $? = 0 configure:8701: result: yes configure:8656: checking for sys/stat.h configure:8677: gcc -c -g -O2 conftest.c >&5 configure:8684: $? = 0 configure:8701: result: yes configure:8656: checking for stdlib.h configure:8677: gcc -c -g -O2 conftest.c >&5 configure:8684: $? = 0 configure:8701: result: yes configure:8656: checking for string.h configure:8677: gcc -c -g -O2 conftest.c >&5 configure:8684: $? = 0 configure:8701: result: yes configure:8656: checking for memory.h configure:8677: gcc -c -g -O2 conftest.c >&5 configure:8684: $? = 0 configure:8701: result: yes configure:8656: checking for strings.h configure:8677: gcc -c -g -O2 conftest.c >&5 configure:8684: $? = 0 configure:8701: result: yes configure:8656: checking for inttypes.h configure:8677: gcc -c -g -O2 conftest.c >&5 configure:8684: $? = 0 configure:8701: result: yes configure:8656: checking for stdint.h configure:8677: gcc -c -g -O2 conftest.c >&5 configure:8684: $? = 0 configure:8701: result: yes configure:8656: checking for unistd.h configure:8677: gcc -c -g -O2 conftest.c >&5 configure:8684: $? = 0 configure:8701: result: yes configure:8719: checking for dlfcn.h configure:8740: gcc -c -g -O2 conftest.c >&5 configure:8747: $? = 0 configure:8764: result: yes configure:8891: checking for C++ compiler version configure:8899: mpic++ --version >&5 g++ (GCC) 4.9.3 Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:8903: $? = 0 configure:8910: mpic++ -v >&5 mpicxx for MVAPICH2 version 1.7 Using built-in specs. Reading specs from /usr/apps/gnu/4.9.3/lib64/gcc/x86_64-unknown-linux-gnu/specs COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../libexec/gcc/x86_64-unknown-linux-gnu/4.9.3/lto-wrapper Target: x86_64-unknown-linux-gnu Configured with: ../gcc-4.9.3/configure --libdir=/usr/apps/gnu/4.9.3/lib64 --prefix=/usr/apps/gnu/4.9.3 --with-mpfr-include=/usr/apps/gnu/4.9.3/include --with-mpfr-lib=/usr/apps/gnu/4.9.3/lib --with-libelf=/usr/apps/gnu/4.9.3 --disable-multilib --with-quad --with-gmp=/usr/apps/gnu/4.9.3/lib --enable-languages=c,c++,fortran,java,objc,go --enable-lto Thread model: posix gcc version 4.9.3 (GCC) configure:8914: $? = 0 configure:8921: mpic++ -V >&5 g++: error: unrecognized command line option '-V' configure:8925: $? = 1 configure:8928: checking whether we are using the GNU C++ compiler configure:8981: result: yes configure:8997: checking dependency style of mpic++ configure:9107: result: gcc3 configure:9130: checking how to run the C++ preprocessor configure:9166: mpic++ -E conftest.cpp configure:9173: $? = 0 configure:9204: mpic++ -E conftest.cpp conftest.cpp:24:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:9211: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | #include configure:9244: result: mpic++ -E configure:9273: mpic++ -E conftest.cpp configure:9280: $? = 0 configure:9311: mpic++ -E conftest.cpp conftest.cpp:24:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:9318: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | #include configure:9530: checking for objdir configure:9545: result: .libs configure:9841: checking if gcc supports -fno-rtti -fno-exceptions configure:9859: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C configure:9863: $? = 0 configure:9876: result: no configure:9896: checking for gcc option to produce PIC configure:10168: result: -fPIC -DPIC configure:10180: checking if gcc PIC flag -fPIC -DPIC works configure:10198: gcc -c -g -O2 -fPIC -DPIC -DPIC conftest.c >&5 configure:10202: $? = 0 configure:10215: result: yes configure:10239: checking if gcc static flag -static works configure:10267: result: yes configure:10282: checking if gcc supports -c -o file.o configure:10303: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5 configure:10307: $? = 0 configure:10329: result: yes configure:10337: checking if gcc supports -c -o file.o configure:10384: result: yes configure:10417: checking whether the gcc linker (/collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries configure:11491: result: yes configure:11528: checking whether -lc should be explicitly linked in configure:11533: gcc -c -g -O2 conftest.c >&5 configure:11536: $? = 0 configure:11551: gcc -shared conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 configure:11554: $? = 0 configure:11566: result: no configure:11730: checking dynamic linker characteristics configure:12173: gcc -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.c >&5 configure:12180: $? = 0 configure:12416: result: GNU/Linux ld.so configure:12518: checking how to hardcode library paths into programs configure:12543: result: immediate configure:13376: checking whether stripping libraries is possible configure:13381: result: yes configure:13416: checking if libtool supports shared libraries configure:13418: result: yes configure:13421: checking whether to build shared libraries configure:13442: result: yes configure:13445: checking whether to build static libraries configure:13449: result: no configure:13599: checking for ld used by mpic++ configure:13666: result: /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64 configure:13675: checking if the linker (/collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) is GNU ld configure:13690: result: yes configure:13745: checking whether the mpic++ linker (/collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries configure:14720: result: yes configure:14748: mpic++ -c -std=c++11 conftest.cpp >&5 configure:14751: $? = 0 configure:14933: checking for mpic++ option to produce PIC configure:15250: result: -fPIC -DPIC configure:15259: checking if mpic++ PIC flag -fPIC -DPIC works configure:15277: mpic++ -c -std=c++11 -fPIC -DPIC -DPIC conftest.cpp >&5 configure:15281: $? = 0 configure:15294: result: yes configure:15315: checking if mpic++ static flag -static works configure:15343: result: no configure:15355: checking if mpic++ supports -c -o file.o configure:15376: mpic++ -c -std=c++11 -o out/conftest2.o conftest.cpp >&5 configure:15380: $? = 0 configure:15402: result: yes configure:15407: checking if mpic++ supports -c -o file.o configure:15454: result: yes configure:15484: checking whether the mpic++ linker (/collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries configure:15510: result: yes configure:15647: checking dynamic linker characteristics configure:16038: mpic++ -o conftest -std=c++11 -Wl,-rpath -Wl,/foo conftest.cpp >&5 configure:16045: $? = 0 configure:16281: result: GNU/Linux ld.so configure:16332: checking how to hardcode library paths into programs configure:16357: result: immediate configure:16419: checking for gawk configure:16446: result: gawk configure:16457: checking for egrep configure:16521: result: /bin/grep -E configure:16540: checking for a BSD-compatible install configure:16608: result: /usr/bin/install -c configure:16619: checking whether ln -s works configure:16623: result: yes configure:16632: checking for doxygen configure:16650: found /usr/bin/doxygen configure:16663: result: /usr/bin/doxygen configure:16681: checking for dot configure:16699: found /usr/bin/dot configure:16712: result: /usr/bin/dot configure:16748: checking for pdflatex configure:16766: found /usr/bin/pdflatex configure:16779: result: /usr/bin/pdflatex configure:16789: checking for makeindex configure:16807: found /usr/bin/makeindex configure:16820: result: /usr/bin/makeindex configure:16830: checking for bibtex configure:16848: found /usr/bin/bibtex configure:16861: result: /usr/bin/bibtex configure:16890: checking for ANSI C header files configure:17058: result: yes configure:17100: checking arpa/inet.h usability configure:17117: mpic++ -c -std=c++11 conftest.cpp >&5 configure:17124: $? = 0 configure:17138: result: yes configure:17142: checking arpa/inet.h presence configure:17157: mpic++ -E conftest.cpp configure:17164: $? = 0 configure:17178: result: yes configure:17211: checking for arpa/inet.h configure:17220: result: yes configure:17100: checking fcntl.h usability configure:17117: mpic++ -c -std=c++11 conftest.cpp >&5 configure:17124: $? = 0 configure:17138: result: yes configure:17142: checking fcntl.h presence configure:17157: mpic++ -E conftest.cpp configure:17164: $? = 0 configure:17178: result: yes configure:17211: checking for fcntl.h configure:17220: result: yes configure:17100: checking float.h usability configure:17117: mpic++ -c -std=c++11 conftest.cpp >&5 configure:17124: $? = 0 configure:17138: result: yes configure:17142: checking float.h presence configure:17157: mpic++ -E conftest.cpp configure:17164: $? = 0 configure:17178: result: yes configure:17211: checking for float.h configure:17220: result: yes configure:17089: checking for inttypes.h configure:17096: result: yes configure:17100: checking limits.h usability configure:17117: mpic++ -c -std=c++11 conftest.cpp >&5 configure:17124: $? = 0 configure:17138: result: yes configure:17142: checking limits.h presence configure:17157: mpic++ -E conftest.cpp configure:17164: $? = 0 configure:17178: result: yes configure:17211: checking for limits.h configure:17220: result: yes configure:17100: checking netdb.h usability configure:17117: mpic++ -c -std=c++11 conftest.cpp >&5 configure:17124: $? = 0 configure:17138: result: yes configure:17142: checking netdb.h presence configure:17157: mpic++ -E conftest.cpp configure:17164: $? = 0 configure:17178: result: yes configure:17211: checking for netdb.h configure:17220: result: yes configure:17100: checking netinet/in.h usability configure:17117: mpic++ -c -std=c++11 conftest.cpp >&5 configure:17124: $? = 0 configure:17138: result: yes configure:17142: checking netinet/in.h presence configure:17157: mpic++ -E conftest.cpp configure:17164: $? = 0 configure:17178: result: yes configure:17211: checking for netinet/in.h configure:17220: result: yes configure:17100: checking stddef.h usability configure:17117: mpic++ -c -std=c++11 conftest.cpp >&5 configure:17124: $? = 0 configure:17138: result: yes configure:17142: checking stddef.h presence configure:17157: mpic++ -E conftest.cpp configure:17164: $? = 0 configure:17178: result: yes configure:17211: checking for stddef.h configure:17220: result: yes configure:17089: checking for stdlib.h configure:17096: result: yes configure:17089: checking for string.h configure:17096: result: yes configure:17089: checking for strings.h configure:17096: result: yes configure:17100: checking sys/file.h usability configure:17117: mpic++ -c -std=c++11 conftest.cpp >&5 configure:17124: $? = 0 configure:17138: result: yes configure:17142: checking sys/file.h presence configure:17157: mpic++ -E conftest.cpp configure:17164: $? = 0 configure:17178: result: yes configure:17211: checking for sys/file.h configure:17220: result: yes configure:17100: checking sys/socket.h usability configure:17117: mpic++ -c -std=c++11 conftest.cpp >&5 configure:17124: $? = 0 configure:17138: result: yes configure:17142: checking sys/socket.h presence configure:17157: mpic++ -E conftest.cpp configure:17164: $? = 0 configure:17178: result: yes configure:17211: checking for sys/socket.h configure:17220: result: yes configure:17100: checking sys/time.h usability configure:17117: mpic++ -c -std=c++11 conftest.cpp >&5 configure:17124: $? = 0 configure:17138: result: yes configure:17142: checking sys/time.h presence configure:17157: mpic++ -E conftest.cpp configure:17164: $? = 0 configure:17178: result: yes configure:17211: checking for sys/time.h configure:17220: result: yes configure:17089: checking for unistd.h configure:17096: result: yes configure:17249: checking for stdlib.h configure:17256: result: yes configure:17395: checking for GNU libc compatible malloc configure:17429: mpic++ -o conftest -std=c++11 conftest.cpp >&5 configure:17433: $? = 0 configure:17439: ./conftest configure:17443: $? = 0 configure:17460: result: yes configure:17488: checking for working memcmp configure:17541: mpic++ -o conftest -std=c++11 conftest.cpp >&5 configure:17545: $? = 0 configure:17551: ./conftest configure:17555: $? = 0 configure:17572: result: yes configure:17586: checking for stdlib.h configure:17593: result: yes configure:17732: checking for GNU libc compatible realloc configure:17766: mpic++ -o conftest -std=c++11 conftest.cpp >&5 configure:17770: $? = 0 configure:17776: ./conftest configure:17780: $? = 0 configure:17797: result: yes configure:17842: checking sys/select.h usability configure:17859: mpic++ -c -std=c++11 conftest.cpp >&5 configure:17866: $? = 0 configure:17880: result: yes configure:17884: checking sys/select.h presence configure:17899: mpic++ -E conftest.cpp configure:17906: $? = 0 configure:17920: result: yes configure:17953: checking for sys/select.h configure:17962: result: yes configure:17831: checking for sys/socket.h configure:17838: result: yes configure:17977: checking types of arguments for select configure:18015: mpic++ -c -std=c++11 conftest.cpp >&5 configure:18022: $? = 0 configure:18043: result: int,fd_set *,struct timeval * configure:18066: checking for size_t configure:18094: mpic++ -c -std=c++11 conftest.cpp >&5 configure:18101: $? = 0 configure:18128: mpic++ -c -std=c++11 conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:86:20: error: expected primary-expression before ')' token if (sizeof ((size_t))) ^ configure:18135: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((size_t))) | return 0; | ; | return 0; | } configure:18158: result: yes configure:18170: checking for working strtod configure:18221: mpic++ -o conftest -std=c++11 conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:92:20: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] char *string = " +69"; ^ conftest.cpp:103:20: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] char *string = "NaN"; ^ configure:18225: $? = 0 configure:18231: ./conftest configure:18235: $? = 0 configure:18252: result: yes configure:18437: checking for atexit configure:18493: mpic++ -o conftest -std=c++11 conftest.cpp >&5 configure:18500: $? = 0 configure:18522: result: yes configure:18437: checking for floor configure:18493: mpic++ -o conftest -std=c++11 conftest.cpp >&5 configure:18500: $? = 0 configure:18522: result: yes configure:18437: checking for getcwd configure:18493: mpic++ -o conftest -std=c++11 conftest.cpp >&5 configure:18500: $? = 0 configure:18522: result: yes configure:18437: checking for gethostbyname configure:18493: mpic++ -o conftest -std=c++11 conftest.cpp >&5 configure:18500: $? = 0 configure:18522: result: yes configure:18437: checking for memset configure:18493: mpic++ -o conftest -std=c++11 conftest.cpp >&5 configure:18500: $? = 0 configure:18522: result: yes configure:18437: checking for pow configure:18493: mpic++ -o conftest -std=c++11 conftest.cpp >&5 configure:18500: $? = 0 configure:18522: result: yes configure:18437: checking for rint configure:18493: mpic++ -o conftest -std=c++11 conftest.cpp >&5 configure:18500: $? = 0 configure:18522: result: yes configure:18437: checking for select configure:18493: mpic++ -o conftest -std=c++11 conftest.cpp >&5 configure:18500: $? = 0 configure:18522: result: yes configure:18437: checking for socket configure:18493: mpic++ -o conftest -std=c++11 conftest.cpp >&5 configure:18500: $? = 0 configure:18522: result: yes configure:18437: checking for sqrt configure:18493: mpic++ -o conftest -std=c++11 conftest.cpp >&5 configure:18500: $? = 0 configure:18522: result: yes configure:18548: checking whether to use FFTW configure:18558: result: yes configure:18565: checking for libfftw3 configure:18599: mpic++ -o conftest -std=c++11 conftest.cpp -lfftw3 -lm -ldl >&5 configure:18606: $? = 0 configure:18687: result: yes configure:18704: checking for fftw3.h configure:18724: mpic++ -c -std=c++11 conftest.cpp >&5 configure:18731: $? = 0 configure:18790: result: yes configure:18848: checking whether to use CUDA configure:18858: result: /opt/cudatoolkit-7.5 configure:18880: checking for nvcc configure:18912: result: /opt/cudatoolkit-7.5/bin/nvcc configure:19079: checking if /opt/cudatoolkit-7.5/bin/nvcc supports -c -o file.o configure:19100: mpic++ -c -std=c++11 -o out/conftest2.o conftest.cu >&5 g++: warning: conftest.cu: linker input file unused because linking not done configure:19104: $? = 0 configure:19126: result: no configure:19131: checking if /opt/cudatoolkit-7.5/bin/nvcc supports -c -o file.o configure:19178: result: no configure:19208: checking whether the /opt/cudatoolkit-7.5/bin/nvcc linker (/collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries configure:20282: result: yes configure:20419: checking how to hardcode library paths into programs configure:20444: result: immediate configure:20501: checking for libcudart configure:20535: mpic++ -o conftest -std=c++11 conftest.cpp -lcudart -lfftw3 -lm -ldl >&5 /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../lib64/gcc/x86_64-unknown-linux-gnu/4.9.3/../../../../x86_64-unknown-linux-gnu/bin/ld: cannot find -lcudart collect2: error: ld returned 1 exit status configure:20542: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char cudaGetDevice (); | int | main () | { | return cudaGetDevice (); | ; | return 0; | } configure:20593: mpic++ -o conftest -std=c++11 -L/opt/cudatoolkit-7.5/lib conftest.cpp -lcudart -lfftw3 -lm -ldl >&5 /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../lib64/gcc/x86_64-unknown-linux-gnu/4.9.3/../../../../x86_64-unknown-linux-gnu/bin/ld: cannot find -lcudart collect2: error: ld returned 1 exit status configure:20600: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char cudaGetDevice (); | int | main () | { | return cudaGetDevice (); | ; | return 0; | } configure:20593: mpic++ -o conftest -std=c++11 -L/opt/cudatoolkit-7.5/lib64 conftest.cpp -lcudart -lfftw3 -lm -ldl >&5 configure:20600: $? = 0 configure:20623: result: yes configure:20660: checking for libcufft configure:20694: mpic++ -o conftest -std=c++11 -L/opt/cudatoolkit-7.5/lib64 conftest.cpp -lcufft -lcudart -lfftw3 -lm -ldl >&5 configure:20701: $? = 0 configure:20782: result: yes configure:20819: checking for libcublas configure:20853: mpic++ -o conftest -std=c++11 -L/opt/cudatoolkit-7.5/lib64 conftest.cpp -lcublas -lcufft -lcudart -lfftw3 -lm -ldl >&5 configure:20860: $? = 0 configure:20941: result: yes configure:20978: checking for cublas_v2.h configure:20998: mpic++ -c -std=c++11 conftest.cpp >&5 conftest.cpp:62:25: fatal error: cublas_v2.h: No such file or directory #include ^ compilation terminated. configure:21005: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | /* end confdefs.h. */ | | #include | configure:21039: mpic++ -c -std=c++11 -I/opt/cudatoolkit-7.5/include conftest.cpp >&5 configure:21046: $? = 0 configure:21064: result: yes configure:21101: checking for libcurand configure:21135: mpic++ -o conftest -std=c++11 -I/opt/cudatoolkit-7.5/include -L/opt/cudatoolkit-7.5/lib64 conftest.cpp -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl >&5 configure:21142: $? = 0 configure:21223: result: yes configure:21260: checking whether CUDA compiles configure:21313: /opt/cudatoolkit-7.5/bin/nvcc -c -O3 -std c++11 --ptxas-options=-v -gencode arch=compute_20,code=compute_20 -x cu -I/opt/cudatoolkit-7.5/include conftest.cpp >&5 configure:21320: $? = 0 configure:21326: result: yes configure:21360: checking whether CUDA runs configure:21394: /opt/cudatoolkit-7.5/bin/nvcc -o conftest -O3 -std c++11 --ptxas-options=-v -gencode arch=compute_20,code=compute_20 -x cu -I/opt/cudatoolkit-7.5/include -Xlinker -L/opt/cudatoolkit conftest.cpp -Xlinker -lcurand,-lcublas,-lcufft,-lcudart,-lfftw3,-lm,-ldl >&5 configure:21398: $? = 0 configure:21404: ./conftest configure:21408: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | /* end confdefs.h. */ | #include | int | main () | { | | int no; | cudaGetDeviceCount(&no); | if (no == 0) return 1; | | ; | return 0; | } configure:21421: result: no configure:21426: WARNING: cannot run CUDA code. Look at config.log for more details. Still compiling since explicitely requested. configure:21533: checking for boostlib >= 1.48 configure:21626: mpic++ -c -std=c++11 -I/opt/cudatoolkit-7.5/include -I/usr/local/tools/boost-mpi-1.55.0/include conftest.cpp >&5 configure:21633: $? = 0 configure:21639: result: yes configure:21863: checking whether the Boost::Unit_Test_Framework library is available configure:21896: mpic++ -c -std=c++11 -I/opt/cudatoolkit-7.5/include -I/usr/local/tools/boost-mpi-1.55.0/include conftest.cpp >&5 configure:21903: $? = 0 configure:21925: result: yes configure:22096: checking whether to use MAGMA configure:22106: result: guess configure:22112: checking for library containing magma_init configure:22153: mpic++ -o conftest -std=c++11 -I/opt/cudatoolkit-7.5/include -L/opt/cudatoolkit-7.5/lib64 conftest.cpp -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl >&5 /var/tmp/ustach2/cciIN4JK.o: In function `main': conftest.cpp:(.text+0x5): undefined reference to `magma_init' collect2: error: ld returned 1 exit status configure:22160: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | #define CUDA /**/ | #define HAVE_BOOST /**/ | #define HAVE_BOOST_UNIT_TEST_FRAMEWORK /**/ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char magma_init (); | int | main () | { | return magma_init (); | ; | return 0; | } configure:22153: mpic++ -o conftest -std=c++11 -I/opt/cudatoolkit-7.5/include -L/opt/cudatoolkit-7.5/lib64 conftest.cpp -lmagma -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl >&5 /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../lib64/gcc/x86_64-unknown-linux-gnu/4.9.3/../../../../x86_64-unknown-linux-gnu/bin/ld: cannot find -lmagma collect2: error: ld returned 1 exit status configure:22160: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | #define CUDA /**/ | #define HAVE_BOOST /**/ | #define HAVE_BOOST_UNIT_TEST_FRAMEWORK /**/ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char magma_init (); | int | main () | { | return magma_init (); | ; | return 0; | } configure:22191: result: no configure:22371: WARNING: MAGMA not found. Some features will not be available! configure:22408: checking whether to use ARPACK configure:22418: result: guess configure:22423: checking for libarpack configure:22457: mpic++ -o conftest -std=c++11 -I/opt/cudatoolkit-7.5/include -L/opt/cudatoolkit-7.5/lib64 conftest.cpp -larpack -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl >&5 /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../lib64/gcc/x86_64-unknown-linux-gnu/4.9.3/../../../../x86_64-unknown-linux-gnu/bin/ld: cannot find -larpack collect2: error: ld returned 1 exit status configure:22464: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | #define CUDA /**/ | #define HAVE_BOOST /**/ | #define HAVE_BOOST_UNIT_TEST_FRAMEWORK /**/ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char dnaupd_ (); | int | main () | { | return dnaupd_ (); | ; | return 0; | } configure:22515: mpic++ -o conftest -std=c++11 -I/opt/cudatoolkit-7.5/include -L/opt/cudatoolkit-7.5/lib64 -L/usr/local/arpack/.libs conftest.cpp -larpack -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl >&5 /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../lib64/gcc/x86_64-unknown-linux-gnu/4.9.3/../../../../x86_64-unknown-linux-gnu/bin/ld: cannot find -larpack collect2: error: ld returned 1 exit status configure:22522: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | #define CUDA /**/ | #define HAVE_BOOST /**/ | #define HAVE_BOOST_UNIT_TEST_FRAMEWORK /**/ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char dnaupd_ (); | int | main () | { | return dnaupd_ (); | ; | return 0; | } configure:22515: mpic++ -o conftest -std=c++11 -I/opt/cudatoolkit-7.5/include -L/opt/cudatoolkit-7.5/lib64 -L/usr/lib64 conftest.cpp -larpack -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl >&5 /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../lib64/gcc/x86_64-unknown-linux-gnu/4.9.3/../../../../x86_64-unknown-linux-gnu/bin/ld: cannot find -larpack collect2: error: ld returned 1 exit status configure:22522: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | #define CUDA /**/ | #define HAVE_BOOST /**/ | #define HAVE_BOOST_UNIT_TEST_FRAMEWORK /**/ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char dnaupd_ (); | int | main () | { | return dnaupd_ (); | ; | return 0; | } configure:22515: mpic++ -o conftest -std=c++11 -I/opt/cudatoolkit-7.5/include -L/opt/cudatoolkit-7.5/lib64 -L/usr/local/lib64 conftest.cpp -larpack -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl >&5 /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../lib64/gcc/x86_64-unknown-linux-gnu/4.9.3/../../../../x86_64-unknown-linux-gnu/bin/ld: cannot find -larpack collect2: error: ld returned 1 exit status configure:22522: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | #define CUDA /**/ | #define HAVE_BOOST /**/ | #define HAVE_BOOST_UNIT_TEST_FRAMEWORK /**/ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char dnaupd_ (); | int | main () | { | return dnaupd_ (); | ; | return 0; | } configure:22515: mpic++ -o conftest -std=c++11 -I/opt/cudatoolkit-7.5/include -L/opt/cudatoolkit-7.5/lib64 -L/opt/lib64 conftest.cpp -larpack -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl >&5 /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../lib64/gcc/x86_64-unknown-linux-gnu/4.9.3/../../../../x86_64-unknown-linux-gnu/bin/ld: cannot find -larpack collect2: error: ld returned 1 exit status configure:22522: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | #define CUDA /**/ | #define HAVE_BOOST /**/ | #define HAVE_BOOST_UNIT_TEST_FRAMEWORK /**/ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char dnaupd_ (); | int | main () | { | return dnaupd_ (); | ; | return 0; | } configure:22515: mpic++ -o conftest -std=c++11 -I/opt/cudatoolkit-7.5/include -L/opt/cudatoolkit-7.5/lib64 -L/sw/lib conftest.cpp -larpack -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl >&5 /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../lib64/gcc/x86_64-unknown-linux-gnu/4.9.3/../../../../x86_64-unknown-linux-gnu/bin/ld: cannot find -larpack collect2: error: ld returned 1 exit status configure:22522: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | #define CUDA /**/ | #define HAVE_BOOST /**/ | #define HAVE_BOOST_UNIT_TEST_FRAMEWORK /**/ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char dnaupd_ (); | int | main () | { | return dnaupd_ (); | ; | return 0; | } configure:22515: mpic++ -o conftest -std=c++11 -I/opt/cudatoolkit-7.5/include -L/opt/cudatoolkit-7.5/lib64 -L/opt/local/lib conftest.cpp -larpack -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl >&5 /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../lib64/gcc/x86_64-unknown-linux-gnu/4.9.3/../../../../x86_64-unknown-linux-gnu/bin/ld: cannot find -larpack collect2: error: ld returned 1 exit status configure:22522: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | #define CUDA /**/ | #define HAVE_BOOST /**/ | #define HAVE_BOOST_UNIT_TEST_FRAMEWORK /**/ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char dnaupd_ (); | int | main () | { | return dnaupd_ (); | ; | return 0; | } configure:22515: mpic++ -o conftest -std=c++11 -I/opt/cudatoolkit-7.5/include -L/opt/cudatoolkit-7.5/lib64 -L/usr/lib conftest.cpp -larpack -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl >&5 /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../lib64/gcc/x86_64-unknown-linux-gnu/4.9.3/../../../../x86_64-unknown-linux-gnu/bin/ld: cannot find -larpack collect2: error: ld returned 1 exit status configure:22522: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | #define CUDA /**/ | #define HAVE_BOOST /**/ | #define HAVE_BOOST_UNIT_TEST_FRAMEWORK /**/ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char dnaupd_ (); | int | main () | { | return dnaupd_ (); | ; | return 0; | } configure:22515: mpic++ -o conftest -std=c++11 -I/opt/cudatoolkit-7.5/include -L/opt/cudatoolkit-7.5/lib64 -L/usr/local/lib conftest.cpp -larpack -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl >&5 /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../lib64/gcc/x86_64-unknown-linux-gnu/4.9.3/../../../../x86_64-unknown-linux-gnu/bin/ld: cannot find -larpack collect2: error: ld returned 1 exit status configure:22522: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | #define CUDA /**/ | #define HAVE_BOOST /**/ | #define HAVE_BOOST_UNIT_TEST_FRAMEWORK /**/ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char dnaupd_ (); | int | main () | { | return dnaupd_ (); | ; | return 0; | } configure:22515: mpic++ -o conftest -std=c++11 -I/opt/cudatoolkit-7.5/include -L/opt/cudatoolkit-7.5/lib64 -L/opt/lib conftest.cpp -larpack -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl >&5 /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../lib64/gcc/x86_64-unknown-linux-gnu/4.9.3/../../../../x86_64-unknown-linux-gnu/bin/ld: cannot find -larpack collect2: error: ld returned 1 exit status configure:22522: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | #define CUDA /**/ | #define HAVE_BOOST /**/ | #define HAVE_BOOST_UNIT_TEST_FRAMEWORK /**/ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char dnaupd_ (); | int | main () | { | return dnaupd_ (); | ; | return 0; | } configure:22548: result: no configure:22571: WARNING: could not find ARPACK library. Some features will not be available! configure:22598: WARNING: ARPACK not found. Some features will not be available! configure:22664: checking for a Python interpreter with version >= 2.5 configure:22681: python -c import sys # split strings by '.' and convert to numeric. Append some zeros # because we need at least 4 digits for the hex conversion. # map returns an iterator in Python 3.0 and a list in 2.x minver = list(map(int, '2.5'.split('.'))) + [0, 0, 0] minverhex = 0 # xrange is not present in Python 3.0 and range returns an iterator for i in list(range(0, 4)): minverhex = (minverhex << 8) + minver[i] sys.exit(sys.hexversion < minverhex) configure:22684: $? = 0 configure:22691: result: python configure:22699: checking for python configure:22717: found /usr/local/bin/python configure:22729: result: /usr/local/bin/python configure:22747: checking for python version configure:22754: result: 2.7 configure:22766: checking for python platform configure:22773: result: linux2 configure:22780: checking for python script directory configure:22809: result: ${prefix}/lib/python2.7/site-packages configure:22818: checking for python extension module directory configure:22847: result: ${exec_prefix}/lib/python2.7/site-packages configure:22870: checking whether python -B works configure:22874: result: yes configure:22882: checking whether the python interface is wanted configure:22892: result: guess configure:22905: checking for python2.7 configure:22935: result: /usr/local/bin/python configure:22959: checking for a version of Python >= '2.5' configure:22965: result: yes configure:22992: checking for python2.7-config configure:23023: result: no configure:23130: checking for the distutils Python package configure:23134: result: yes configure:23152: checking for Python site-packages path configure:23158: result: /usr/apps/python/lib/python2.7/site-packages configure:23165: checking for Python include path configure:23181: result: -I/usr/apps/python/include/python2.7 configure:23187: checking for Python library path configure:23269: result: -L/collab/usr/gapps/python/build/spack/opt/spack/chaos_5_x86_64_ib/gcc-4.4.7/python-2.7.10-yqkr6m74axh3nafjscgtjb3zj3htx3fe/lib -lpython2.7 configure:23275: checking python extra libraries configure:23282: result: -lpthread -ldl -lutil configure:23287: checking python extra linking flags configure:23294: result: -Xlinker -export-dynamic configure:23300: checking consistency of all components of python development environment configure:23336: gcc -o conftest -g -O2 -I/opt/cudatoolkit-7.5/include -I/usr/apps/python/include/python2.7 -L/opt/cudatoolkit-7.5/lib64 conftest.c -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl -L/collab/usr/gapps/python/build/spack/opt/spack/chaos_5_x86_64_ib/gcc-4.4.7/python-2.7.10-yqkr6m74axh3nafjscgtjb3zj3htx3fe/lib -lpython2.7 -Xlinker -export-dynamic -lpthread -ldl -lutil >&5 configure:23343: $? = 0 configure:23371: result: yes configure:23425: checking for cython configure:23456: result: no configure:23476: checking python module: numpy configure:23481: result: yes configure:23498: checking for numpy include path configure:23502: result: /usr/apps/python/lib/python2.7/site-packages/numpy/core/include configure:23540: checking whether to build the Tcl interface configure:23550: result: yes configure:23559: checking for libtcl8.6 configure:23593: mpic++ -o conftest -std=c++11 -I/opt/cudatoolkit-7.5/include -L/opt/cudatoolkit-7.5/lib64 conftest.cpp -ltcl8.6 -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl >&5 /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../lib64/gcc/x86_64-unknown-linux-gnu/4.9.3/../../../../x86_64-unknown-linux-gnu/bin/ld: cannot find -ltcl8.6 collect2: error: ld returned 1 exit status configure:23600: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | #define CUDA /**/ | #define HAVE_BOOST /**/ | #define HAVE_BOOST_UNIT_TEST_FRAMEWORK /**/ | #define HAVE_PYTHON "2.7" | #define PYTHON_DEV /**/ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char Tcl_Init (); | int | main () | { | return Tcl_Init (); | ; | return 0; | } configure:23651: mpic++ -o conftest -std=c++11 -I/opt/cudatoolkit-7.5/include -L/opt/cudatoolkit-7.5/lib64 -L/usr/lib64 conftest.cpp -ltcl8.6 -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl >&5 /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../lib64/gcc/x86_64-unknown-linux-gnu/4.9.3/../../../../x86_64-unknown-linux-gnu/bin/ld: cannot find -ltcl8.6 collect2: error: ld returned 1 exit status configure:23658: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | #define CUDA /**/ | #define HAVE_BOOST /**/ | #define HAVE_BOOST_UNIT_TEST_FRAMEWORK /**/ | #define HAVE_PYTHON "2.7" | #define PYTHON_DEV /**/ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char Tcl_Init (); | int | main () | { | return Tcl_Init (); | ; | return 0; | } configure:23651: mpic++ -o conftest -std=c++11 -I/opt/cudatoolkit-7.5/include -L/opt/cudatoolkit-7.5/lib64 -L/usr/local/lib64 conftest.cpp -ltcl8.6 -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl >&5 /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../lib64/gcc/x86_64-unknown-linux-gnu/4.9.3/../../../../x86_64-unknown-linux-gnu/bin/ld: cannot find -ltcl8.6 collect2: error: ld returned 1 exit status configure:23658: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | #define CUDA /**/ | #define HAVE_BOOST /**/ | #define HAVE_BOOST_UNIT_TEST_FRAMEWORK /**/ | #define HAVE_PYTHON "2.7" | #define PYTHON_DEV /**/ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char Tcl_Init (); | int | main () | { | return Tcl_Init (); | ; | return 0; | } configure:23651: mpic++ -o conftest -std=c++11 -I/opt/cudatoolkit-7.5/include -L/opt/cudatoolkit-7.5/lib64 -L/opt/lib64 conftest.cpp -ltcl8.6 -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl >&5 /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../lib64/gcc/x86_64-unknown-linux-gnu/4.9.3/../../../../x86_64-unknown-linux-gnu/bin/ld: cannot find -ltcl8.6 collect2: error: ld returned 1 exit status configure:23658: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | #define CUDA /**/ | #define HAVE_BOOST /**/ | #define HAVE_BOOST_UNIT_TEST_FRAMEWORK /**/ | #define HAVE_PYTHON "2.7" | #define PYTHON_DEV /**/ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char Tcl_Init (); | int | main () | { | return Tcl_Init (); | ; | return 0; | } configure:23651: mpic++ -o conftest -std=c++11 -I/opt/cudatoolkit-7.5/include -L/opt/cudatoolkit-7.5/lib64 -L/sw/lib conftest.cpp -ltcl8.6 -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl >&5 /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../lib64/gcc/x86_64-unknown-linux-gnu/4.9.3/../../../../x86_64-unknown-linux-gnu/bin/ld: cannot find -ltcl8.6 collect2: error: ld returned 1 exit status configure:23658: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | #define CUDA /**/ | #define HAVE_BOOST /**/ | #define HAVE_BOOST_UNIT_TEST_FRAMEWORK /**/ | #define HAVE_PYTHON "2.7" | #define PYTHON_DEV /**/ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char Tcl_Init (); | int | main () | { | return Tcl_Init (); | ; | return 0; | } configure:23651: mpic++ -o conftest -std=c++11 -I/opt/cudatoolkit-7.5/include -L/opt/cudatoolkit-7.5/lib64 -L/opt/local/lib conftest.cpp -ltcl8.6 -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl >&5 /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../lib64/gcc/x86_64-unknown-linux-gnu/4.9.3/../../../../x86_64-unknown-linux-gnu/bin/ld: cannot find -ltcl8.6 collect2: error: ld returned 1 exit status configure:23658: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | #define CUDA /**/ | #define HAVE_BOOST /**/ | #define HAVE_BOOST_UNIT_TEST_FRAMEWORK /**/ | #define HAVE_PYTHON "2.7" | #define PYTHON_DEV /**/ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char Tcl_Init (); | int | main () | { | return Tcl_Init (); | ; | return 0; | } configure:23651: mpic++ -o conftest -std=c++11 -I/opt/cudatoolkit-7.5/include -L/opt/cudatoolkit-7.5/lib64 -L/usr/lib conftest.cpp -ltcl8.6 -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl >&5 /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../lib64/gcc/x86_64-unknown-linux-gnu/4.9.3/../../../../x86_64-unknown-linux-gnu/bin/ld: cannot find -ltcl8.6 collect2: error: ld returned 1 exit status configure:23658: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | #define CUDA /**/ | #define HAVE_BOOST /**/ | #define HAVE_BOOST_UNIT_TEST_FRAMEWORK /**/ | #define HAVE_PYTHON "2.7" | #define PYTHON_DEV /**/ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char Tcl_Init (); | int | main () | { | return Tcl_Init (); | ; | return 0; | } configure:23651: mpic++ -o conftest -std=c++11 -I/opt/cudatoolkit-7.5/include -L/opt/cudatoolkit-7.5/lib64 -L/usr/local/lib conftest.cpp -ltcl8.6 -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl >&5 /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../lib64/gcc/x86_64-unknown-linux-gnu/4.9.3/../../../../x86_64-unknown-linux-gnu/bin/ld: cannot find -ltcl8.6 collect2: error: ld returned 1 exit status configure:23658: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | #define CUDA /**/ | #define HAVE_BOOST /**/ | #define HAVE_BOOST_UNIT_TEST_FRAMEWORK /**/ | #define HAVE_PYTHON "2.7" | #define PYTHON_DEV /**/ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char Tcl_Init (); | int | main () | { | return Tcl_Init (); | ; | return 0; | } configure:23651: mpic++ -o conftest -std=c++11 -I/opt/cudatoolkit-7.5/include -L/opt/cudatoolkit-7.5/lib64 -L/opt/lib conftest.cpp -ltcl8.6 -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl >&5 /collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/bin/../lib64/gcc/x86_64-unknown-linux-gnu/4.9.3/../../../../x86_64-unknown-linux-gnu/bin/ld: cannot find -ltcl8.6 collect2: error: ld returned 1 exit status configure:23658: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ESPResSo" | #define PACKAGE_TARNAME "espresso" | #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" | #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" | #define PACKAGE_BUGREPORT "address@hidden" | #define PACKAGE "espresso" | #define VERSION "3.3.0-2099-gbeb1108" | #define HAVE_MPI 1 | #define HAVE_PRETTYFUNC /**/ | #define __PRETTYFUNC__ __PRETTY_FUNCTION__ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_STDLIB_H 1 | #define HAVE_REALLOC 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define HAVE_ATEXIT 1 | #define HAVE_FLOOR 1 | #define HAVE_GETCWD 1 | #define HAVE_GETHOSTBYNAME 1 | #define HAVE_MEMSET 1 | #define HAVE_POW 1 | #define HAVE_RINT 1 | #define HAVE_SELECT 1 | #define HAVE_SOCKET 1 | #define HAVE_SQRT 1 | #define FFTW /**/ | #define CUDA /**/ | #define HAVE_BOOST /**/ | #define HAVE_BOOST_UNIT_TEST_FRAMEWORK /**/ | #define HAVE_PYTHON "2.7" | #define PYTHON_DEV /**/ | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char Tcl_Init (); | int | main () | { | return Tcl_Init (); | ; | return 0; | } configure:23684: result: no configure:23559: checking for libtcl8.5 configure:23593: mpic++ -o conftest -std=c++11 -I/opt/cudatoolkit-7.5/include -L/opt/cudatoolkit-7.5/lib64 conftest.cpp -ltcl8.5 -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl >&5 configure:23600: $? = 0 configure:23681: result: yes configure:23878: checking for tcl.h configure:23898: mpic++ -c -std=c++11 -I/opt/cudatoolkit-7.5/include conftest.cpp >&5 configure:23905: $? = 0 configure:23964: result: yes configure:24014: checking whether to use Tk configure:24024: result: yes configure:25905: checking whether to build with h5md support configure:25915: result: no configure:26195: checking whether to use efence configure:26354: result: no configure:26360: checking whether the variable MYCONFIG is set configure:26378: result: no configure:26399: checking the number of available CPUs configure:26443: result: 32 configure:26711: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by ESPResSo config.status 3.3.0-2099-gbeb1108, which was generated by GNU Autoconf 2.63. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on surface86 config.status:1255: creating Makefile config.status:1255: creating config/Makefile config.status:1255: creating config/myconfig-sample-header.hpp config.status:1255: creating src/Makefile config.status:1255: creating src/core/Makefile config.status:1255: creating src/tcl/Makefile config.status:1255: creating src/python/espressomd/Makefile config.status:1255: creating src/core/unit_tests/Makefile config.status:1255: creating tools/Makefile config.status:1255: creating scripts/Makefile config.status:1255: creating testsuite/Makefile config.status:1255: creating testsuite/tcl/Makefile config.status:1255: creating testsuite/python/Makefile config.status:1255: creating doc/Makefile config.status:1255: creating doc/logo/Makefile config.status:1255: creating doc/ug/Makefile config.status:1255: creating doc/dg/Makefile config.status:1255: creating doc/doxygen/Makefile config.status:1255: creating doc/tutorials/Makefile config.status:1255: creating doc/tutorials/00-building_espresso/Makefile config.status:1255: creating doc/tutorials/01-lennard_jones/Makefile config.status:1255: creating doc/tutorials/02-charged_system/Makefile config.status:1255: creating doc/tutorials/03-object_in_fluid/Makefile config.status:1255: creating doc/tutorials/04-lattice_boltzmann/Makefile config.status:1255: creating doc/tutorials/05-raspberry_electrophoresis/Makefile config.status:1255: creating doc/tutorials/06-active_matter/Makefile config.status:1255: creating doc/tutorials/07-electrokinetics/Makefile config.status:1255: creating doc/tutorials/08-visualization/Makefile config.status:1255: creating doc/latexit.sh config.status:1255: creating testsuite/tcl/runtest.sh config.status:1255: creating testsuite/python/runtest.sh config.status:1255: creating tools/es_mpiexec config.status:1255: creating src/python/pypresso config.status:1255: creating src/acconfig.hpp config.status:1522: executing depfiles commands config.status:1522: executing libtool commands config.status:1522: executing myconfig-sample.hpp commands ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_cxx_compiler_gnu=yes ac_cv_cxx_var_prettyfunc=__PRETTY_FUNCTION__ ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CPU_COUNT_set= ac_cv_env_CPU_COUNT_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_CYFLAGS_set= ac_cv_env_CYFLAGS_value= ac_cv_env_CYTHON_set= ac_cv_env_CYTHON_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_MPICXX_set= ac_cv_env_MPICXX_value= ac_cv_env_MPIEXEC_set= ac_cv_env_MPIEXEC_value= ac_cv_env_MYCONFIG_set= ac_cv_env_MYCONFIG_value= ac_cv_env_NVCCFLAGS_set= ac_cv_env_NVCCFLAGS_value= ac_cv_env_NVCC_set=set ac_cv_env_NVCC_value=/opt/cudatoolkit-7.5/bin/nvcc ac_cv_env_PYTHON_VERSION_set= ac_cv_env_PYTHON_VERSION_value= ac_cv_env_XMKMF_set= ac_cv_env_XMKMF_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_atexit=yes ac_cv_func_floor=yes ac_cv_func_getcwd=yes ac_cv_func_gethostbyname=yes ac_cv_func_malloc_0_nonnull=yes ac_cv_func_memcmp_working=yes ac_cv_func_memset=yes ac_cv_func_pow=yes ac_cv_func_realloc_0_nonnull=yes ac_cv_func_rint=yes ac_cv_func_select=yes ac_cv_func_select_args='int,fd_set *,struct timeval *' ac_cv_func_socket=yes ac_cv_func_sqrt=yes ac_cv_func_strtod=yes ac_cv_header_arpa_inet_h=yes ac_cv_header_dlfcn_h=yes ac_cv_header_fcntl_h=yes ac_cv_header_float_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_limits_h=yes ac_cv_header_memory_h=yes ac_cv_header_netdb_h=yes ac_cv_header_netinet_in_h=yes ac_cv_header_stdc=yes ac_cv_header_stddef_h=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_file_h=yes ac_cv_header_sys_select_h=yes ac_cv_header_sys_socket_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_time_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_objext=o ac_cv_path_BIBTEX=/usr/bin/bibtex ac_cv_path_CYTHON=no ac_cv_path_DOT=/usr/bin/dot ac_cv_path_DOXYGEN=/usr/bin/doxygen ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_FGREP='/bin/grep -F' ac_cv_path_GREP=/bin/grep ac_cv_path_MAKEINDEX=/usr/bin/makeindex ac_cv_path_MPIEXEC=/usr/local/tools/openmpi-gnu-debug-1.4.3/bin/mpiexec ac_cv_path_NVCC=/opt/cudatoolkit-7.5/bin/nvcc ac_cv_path_PDFLATEX=/usr/bin/pdflatex ac_cv_path_PYTHON=/usr/local/bin/python ac_cv_path_PYTHONCONFIG=no ac_cv_path_SED=/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='mpic++ -E' ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=mpic++ ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_c_o=yes ac_cv_prog_make_make_set=yes ac_cv_search_magma_init=no ac_cv_target=x86_64-unknown-linux-gnu ac_cv_type_size_t=yes am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_pathless_PYTHON=python am_cv_prog_tar_ustar=gnutar am_cv_python_platform=linux2 am_cv_python_pyexecdir='${exec_prefix}/lib/python2.7/site-packages' am_cv_python_pythondir='${prefix}/lib/python2.7/site-packages' am_cv_python_version=2.7 ax_cv_boost_unit_test_framework=yes ax_cv_cxx_compile_cxx11=no ax_cv_cxx_compile_cxx11__std_cpp11=yes lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/x86_64-unknown-linux-gnu/bin/ld lt_cv_path_LDCXX='/collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64' lt_cv_path_NM='/usr/apps/gnu/4.9.3/bin/nm -B' lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CUDA=no lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=yes lt_cv_prog_compiler_static_works_CXX=no lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=3458764513820540925 ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /g/g14/ustach2/espresso/may2016/espressomd/config/missing --run aclocal-1.11' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='${SHELL} /g/g14/ustach2/espresso/may2016/espressomd/config/missing --run tar' AM_BACKSLASH='\' AM_DEFAULT_VERBOSITY='0' AR='ar' AUTOCONF='${SHELL} /g/g14/ustach2/espresso/may2016/espressomd/config/missing --run autoconf' AUTOHEADER='${SHELL} /g/g14/ustach2/espresso/may2016/espressomd/config/missing --run autoheader' AUTOMAKE='${SHELL} /g/g14/ustach2/espresso/may2016/espressomd/config/missing --run automake-1.11' AWK='gawk' BIBTEX='/usr/bin/bibtex' BOOST_CPPFLAGS='-I/usr/local/tools/boost-mpi-1.55.0/include' BOOST_LDFLAGS='-L/usr/local/tools/boost-mpi-1.55.0/lib' BOOST_UNIT_TEST_FRAMEWORK_LIB='-lboost_unit_test_framework' CC='gcc' CCDEPMODE='depmode=gcc3' CFLAGS='-g -O2' CONFIG_STATUS_DEPENDENCIES='$(top_srcdir)/src/features.def $(top_srcdir)/config/gen_sampleconfig.py' CPP='gcc -E' CPPFLAGS=' -I/opt/cudatoolkit-7.5/include' CPU_COUNT='32' CUDA_FALSE='#' CUDA_TRUE='' CXX='mpic++' CXXCPP='mpic++ -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS=' -std=c++11' CYFLAGS='' CYGPATH_W='echo' CYTHON='no' DARWIN_FALSE='' DARWIN_TRUE='#' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DEVEL_SRC_FALSE='#' DEVEL_SRC_TRUE='' DOT='/usr/bin/dot' DOT_PATH='/usr/bin' DOXYGEN='/usr/bin/doxygen' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' ESPRESSO_MPIEXEC='/g/g14/ustach2/espresso/may2016/espressomd/build2/tools/es_mpiexec' EXEEXT='' FGREP='/bin/grep -F' GREP='/bin/grep' HAVE_CXX11='' HAVE_DOT='YES' HAVE_DOXYGEN_FALSE='#' HAVE_DOXYGEN_TRUE='' HAVE_LATEX_FALSE='#' HAVE_LATEX_TRUE='' HAVE_PYTHON_FALSE='#' HAVE_PYTHON_TRUE='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='/collab/usr/gapps/opnsrc/gnu/dev/lnx-2.12-o/4.9.3/x86_64-unknown-linux-gnu/bin/ld -m elf_x86_64' LDFLAGS=' -L/opt/cudatoolkit-7.5/lib64' LIBOBJS='' LIBS='-ltcl8.5 -lcurand -lcublas -lcufft -lcudart -lfftw3 -lm -ldl' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINDEX='/usr/bin/makeindex' MAKEINFO='${SHELL} /g/g14/ustach2/espresso/may2016/espressomd/config/missing --run makeinfo' MKDIR_P='/bin/mkdir -p' MPICXX='' MPIEXEC='/usr/local/tools/openmpi-gnu-debug-1.4.3/bin/mpiexec' MPI_FAKE='' MPI_FAKE_FALSE='' MPI_FAKE_TRUE='#' MYCONFIG='myconfig.hpp' MYCONFIG_FALSE='' MYCONFIG_TRUE='#' MYMPIEXEC='/g/g14/ustach2/espresso/may2016/espressomd/build2/mympiexec.sh' NM='/usr/apps/gnu/4.9.3/bin/nm -B' NMEDIT='' NVCC='/opt/cudatoolkit-7.5/bin/nvcc' NVCCFLAGS=' -O3 -std c++11 --ptxas-options=-v -gencode arch=compute_20,code=compute_20' OBJDUMP='objdump' OBJEXT='o' OTOOL64='' OTOOL='' PACKAGE='espresso' PACKAGE_BUGREPORT='address@hidden' PACKAGE_NAME='ESPResSo' PACKAGE_STRING='ESPResSo 3.3.0-2099-gbeb1108' PACKAGE_TARNAME='espresso' PACKAGE_VERSION='3.3.0-2099-gbeb1108' PATH_SEPARATOR=':' PDFLATEX='/usr/bin/pdflatex' POW_LIB='' PYTHON='/usr/local/bin/python' PYTHONCONFIG='no' PYTHON_CPPFLAGS='-I/usr/apps/python/include/python2.7 -I/usr/apps/python/lib/python2.7/site-packages/numpy/core/include' PYTHON_EXEC_PREFIX='${exec_prefix}' PYTHON_EXTRA_LDFLAGS='-Xlinker -export-dynamic' PYTHON_EXTRA_LIBS='-lpthread -ldl -lutil' PYTHON_INTERFACE_FALSE='' PYTHON_INTERFACE_TRUE='#' PYTHON_LDFLAGS='-L/collab/usr/gapps/python/build/spack/opt/spack/chaos_5_x86_64_ib/gcc-4.4.7/python-2.7.10-yqkr6m74axh3nafjscgtjb3zj3htx3fe/lib -lpython2.7' PYTHON_PLATFORM='linux2' PYTHON_PREFIX='${prefix}' PYTHON_SITE_PKG='/usr/apps/python/lib/python2.7/site-packages' PYTHON_VERSION='2.7' RANLIB='ranlib' SED='/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' TCL_FALSE='#' TCL_TRUE='' UNIT_TESTS_FALSE='#' UNIT_TESTS_TRUE='' VERSION='3.3.0-2099-gbeb1108' XMKMF='' X_CFLAGS='' X_EXTRA_LIBS='' X_LIBS='' X_PRE_LIBS='' ac_ct_CC='gcc' ac_ct_CXX='mpic++' ac_ct_DUMPBIN='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc=' -I$(srcdir)' am__leading_dot='.' am__quote='' am__tar='tar --format=ustar -chf - "$$tardir"' am__untar='tar -xf -' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' buildscriptsdir='${abs_top_builddir}/scripts' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /g/g14/ustach2/espresso/may2016/espressomd/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' lt_ECHO='echo' mandir='${datarootdir}/man' mkdir_p='/bin/mkdir -p' objdir='.libs' oldincludedir='/usr/include' pdfdir='${docdir}' pkgpyexecdir='${pyexecdir}/espresso' pkgpythondir='${pythondir}/espresso' prefix='/g/g14/ustach2/Espresso' program_transform_name='s,x,x,' psdir='${docdir}' pyexecdir='${exec_prefix}/lib/python2.7/site-packages' pythondir='${prefix}/lib/python2.7/site-packages' sbindir='${exec_prefix}/sbin' scriptsdir='${pkgdatadir}/scripts' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target='x86_64-unknown-linux-gnu' target_alias='' target_cpu='x86_64' target_os='linux-gnu' target_vendor='unknown' toolsdir='${pkgdatadir}/tools' ## ----------- ## ## confdefs.h. ## ## ----------- ## #define PACKAGE_NAME "ESPResSo" #define PACKAGE_TARNAME "espresso" #define PACKAGE_VERSION "3.3.0-2099-gbeb1108" #define PACKAGE_STRING "ESPResSo 3.3.0-2099-gbeb1108" #define PACKAGE_BUGREPORT "address@hidden" #define PACKAGE "espresso" #define VERSION "3.3.0-2099-gbeb1108" #define HAVE_MPI 1 #define HAVE_PRETTYFUNC /**/ #define __PRETTYFUNC__ __PRETTY_FUNCTION__ #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define STDC_HEADERS 1 #define HAVE_ARPA_INET_H 1 #define HAVE_FCNTL_H 1 #define HAVE_FLOAT_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_LIMITS_H 1 #define HAVE_NETDB_H 1 #define HAVE_NETINET_IN_H 1 #define HAVE_STDDEF_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_STRINGS_H 1 #define HAVE_SYS_FILE_H 1 #define HAVE_SYS_SOCKET_H 1 #define HAVE_SYS_TIME_H 1 #define HAVE_UNISTD_H 1 #define HAVE_STDLIB_H 1 #define HAVE_MALLOC 1 #define HAVE_STDLIB_H 1 #define HAVE_REALLOC 1 #define HAVE_SYS_SELECT_H 1 #define HAVE_SYS_SOCKET_H 1 #define SELECT_TYPE_ARG1 int #define SELECT_TYPE_ARG234 (fd_set *) #define SELECT_TYPE_ARG5 (struct timeval *) #define HAVE_ATEXIT 1 #define HAVE_FLOOR 1 #define HAVE_GETCWD 1 #define HAVE_GETHOSTBYNAME 1 #define HAVE_MEMSET 1 #define HAVE_POW 1 #define HAVE_RINT 1 #define HAVE_SELECT 1 #define HAVE_SOCKET 1 #define HAVE_SQRT 1 #define FFTW /**/ #define CUDA /**/ #define HAVE_BOOST /**/ #define HAVE_BOOST_UNIT_TEST_FRAMEWORK /**/ #define HAVE_PYTHON "2.7" #define PYTHON_DEV /**/ #define TCL /**/ configure: exit 0