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Re: [ESPResSo-users] Compilation Trouble

From: Pierre de Buyl
Subject: Re: [ESPResSo-users] Compilation Trouble
Date: Wed, 8 Feb 2017 14:58:38 +0100
User-agent: Mutt/1.5.23 (2014-03-12)


As cmake cannot find the file "h5xx/h5xx.hpp: No such file or directory" I guess
that you have not fetched it. This is a recent addition to espresso and I don't
know if it is documented yet.

>From the root of the repository:

git submodule init
git submodule update

then a re-run of cmake should fix the problem.



On Wed, Feb 08, 2017 at 02:44:47PM +0100, Clemens Jochum wrote:
> Dear all,
> I am trying to compile the latest development code from github and get the
> following error:
> /In file included from
> ~/espresso/espresso-python/src/core/io/writer/h5md/h5md_core.cpp:23:0://
> //~/espresso/espresso-python/src/core/io/writer/h5md/h5md_core.hpp:39:25:
> fatal error: h5xx/h5xx.hpp: No such file or directory//
> //compilation terminated.//
> //src/core/io/writer/h5md/CMakeFiles/H5mdCore.dir/build.make:62: recipe for
> target 'src/core/io/writer/h5md/CMakeFiles/H5mdCore.dir/h5md_core.cpp.o'
> failed//
> //make[2]: ***
> [src/core/io/writer/h5md/CMakeFiles/H5mdCore.dir/h5md_core.cpp.o] Error 1//
> //CMakeFiles/Makefile2:1853: recipe for target
> 'src/core/io/writer/h5md/CMakeFiles/H5mdCore.dir/all' failed//
> //make[1]: *** [src/core/io/writer/h5md/CMakeFiles/H5mdCore.dir/all] Error
> 2//
> //Makefile:138: recipe for target 'all' failed//
> //make: *** [all] Error 2//
> /
> Obviously the problem lies with HDF5. I can successfully compile without it.
> However, I want to use it for my project.
> I have libhdf5-openmpi-dev and libhdf5-mpich-dev installed.
> Any idea how to solve this is really appreciated!
> Best,
> Clemens

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