[  0%] Built target myconfig
[  0%] Built target check_myconfig
[  0%] Generating config-features.hpp, config-features.cpp
Reading definitions from /home/zhrq/espresso-4.0.1/src/features.def...
Done.
Writing /home/zhrq/espresso-4.0.1/build/src/core/config-features.hpp...
Done.
Writing /home/zhrq/espresso-4.0.1/build/src/core/config-features.cpp...
Done.
Scanning dependencies of target EspressoConfig
[  1%] Building CXX object src/core/CMakeFiles/EspressoConfig.dir/config-features.cpp.o
[  1%] Linking CXX shared library libEspressoConfig.so
[  1%] Built target EspressoConfig
Scanning dependencies of target cluster_analysis
[  1%] Building CXX object src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/Cluster.cpp.o
[  1%] Building CXX object src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/ClusterStructure.cpp.o
[  1%] Linking CXX shared library libcluster_analysis.so
[  1%] Built target cluster_analysis
Scanning dependencies of target Observables
[  1%] Building CXX object src/core/observables/CMakeFiles/Observables.dir/CylindricalLBFluxDensityProfileAtParticlePositions.cpp.o
[  1%] Building CXX object src/core/observables/CMakeFiles/Observables.dir/CylindricalLBVelocityProfile.cpp.o
[  1%] Building CXX object src/core/observables/CMakeFiles/Observables.dir/CylindricalLBVelocityProfileAtParticlePositions.cpp.o
[  2%] Building CXX object src/core/observables/CMakeFiles/Observables.dir/LBVelocityProfile.cpp.o
[  2%] Linking CXX shared library libObservables.so
[  2%] Built target Observables
Scanning dependencies of target Accumulators
[  2%] Building CXX object src/core/accumulators/CMakeFiles/Accumulators.dir/Correlator.cpp.o
[  2%] Building CXX object src/core/accumulators/CMakeFiles/Accumulators.dir/MeanVarianceCalculator.cpp.o
[  2%] Linking CXX shared library libAccumulators.so
[  2%] Built target Accumulators
Scanning dependencies of target Actor
[  2%] Building CXX object src/core/actor/CMakeFiles/Actor.dir/ActorList.cpp.o
[  4%] Building CXX object src/core/actor/CMakeFiles/Actor.dir/DipolarBarnesHut.cpp.o
[  4%] Building CXX object src/core/actor/CMakeFiles/Actor.dir/DipolarDirectSum.cpp.o
[  4%] Building CXX object src/core/actor/CMakeFiles/Actor.dir/HarmonicOrientationWell.cpp.o
[  4%] Building CXX object src/core/actor/CMakeFiles/Actor.dir/HarmonicWell.cpp.o
[  4%] Building CXX object src/core/actor/CMakeFiles/Actor.dir/Mmm1dgpuForce.cpp.o
[  5%] Linking CXX shared library libActor.so
[  5%] Built target Actor
Scanning dependencies of target ImmersedBoundary
[  5%] Building CXX object src/core/immersed_boundary/CMakeFiles/ImmersedBoundary.dir/ImmersedBoundaries.cpp.o
[  6%] Building CXX object src/core/immersed_boundary/CMakeFiles/ImmersedBoundary.dir/ibm_tribend.cpp.o
[  6%] Building CXX object src/core/immersed_boundary/CMakeFiles/ImmersedBoundary.dir/ibm_triel.cpp.o
[  6%] Linking CXX shared library libImmersedBoundary.so
[  6%] Built target ImmersedBoundary
Scanning dependencies of target VirtualSites
[  8%] Building CXX object src/core/virtual_sites/CMakeFiles/VirtualSites.dir/VirtualSitesInertialessTracers.cpp.o
[  8%] Building CXX object src/core/virtual_sites/CMakeFiles/VirtualSites.dir/VirtualSitesRelative.cpp.o
[  8%] Building CXX object src/core/virtual_sites/CMakeFiles/VirtualSites.dir/lb_inertialess_tracers.cpp.o
[  8%] Building CXX object src/core/virtual_sites/CMakeFiles/VirtualSites.dir/lb_inertialess_tracers_cuda_interface.cpp.o
[  8%] Building CXX object src/core/virtual_sites/CMakeFiles/VirtualSites.dir/virtual_sites_com.cpp.o
[  9%] Linking CXX shared library libVirtualSites.so
[  9%] Built target VirtualSites
Scanning dependencies of target ObjectInFluid
[  9%] Building CXX object src/core/object-in-fluid/CMakeFiles/ObjectInFluid.dir/affinity.cpp.o
[  9%] Building CXX object src/core/object-in-fluid/CMakeFiles/ObjectInFluid.dir/membrane_collision.cpp.o
[  9%] Building CXX object src/core/object-in-fluid/CMakeFiles/ObjectInFluid.dir/oif_global_forces.cpp.o
[  9%] Building CXX object src/core/object-in-fluid/CMakeFiles/ObjectInFluid.dir/oif_local_forces.cpp.o
[ 10%] Building CXX object src/core/object-in-fluid/CMakeFiles/ObjectInFluid.dir/out_direction.cpp.o
[ 10%] Linking CXX shared library libObjectInFluid.so
[ 10%] Built target ObjectInFluid
Scanning dependencies of target Shapes
[ 10%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/Cylinder.cpp.o
[ 10%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/Ellipsoid.cpp.o
[ 10%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/HollowCone.cpp.o
[ 12%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/Maze.cpp.o
[ 12%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/Rhomboid.cpp.o
[ 12%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/SimplePore.cpp.o
[ 12%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/Slitpore.cpp.o
[ 12%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/Sphere.cpp.o
[ 13%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/SpheroCylinder.cpp.o
[ 13%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/Stomatocyte.cpp.o
[ 13%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/Wall.cpp.o
[ 13%] Linking CXX shared library libShapes.so
[ 13%] Built target Shapes
Scanning dependencies of target Constraints
[ 13%] Building CXX object src/core/constraints/CMakeFiles/Constraints.dir/HomogeneousMagneticField.cpp.o
[ 13%] Building CXX object src/core/constraints/CMakeFiles/Constraints.dir/ShapeBasedConstraint.cpp.o
[ 13%] Linking CXX shared library libConstraints.so
[ 13%] Built target Constraints
[ 13%] Generating config-version.cpp
Scanning dependencies of target EspressoCore
[ 13%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/EspressoSystemInterface.cpp.o
[ 13%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/MpiCallbacks.cpp.o
[ 15%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/PdbParser.cpp.o
[ 15%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/RuntimeError.cpp.o
[ 15%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/RuntimeErrorCollector.cpp.o
[ 15%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/RuntimeErrorStream.cpp.o
[ 16%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/SystemInterface.cpp.o
[ 16%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/Vector.cpp.o
[ 16%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/accumulators.cpp.o
[ 16%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/angle_cosine.cpp.o
[ 16%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/angle_cossquare.cpp.o
[ 17%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/angle_harmonic.cpp.o
[ 17%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/angledist.cpp.o
[ 17%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bmhtf-nacl.cpp.o
[ 17%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_coulomb.cpp.o
[ 19%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_coulomb_p3m_sr.cpp.o
[ 19%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/buckingham.cpp.o
[ 19%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/cells.cpp.o
[ 19%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/collision.cpp.o
[ 19%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/comfixed_global.cpp.o
[ 20%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/communication.cpp.o
[ 20%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/constraints.cpp.o
[ 20%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/cos2.cpp.o
[ 20%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/cuda_init.cpp.o
[ 21%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/cuda_interface.cpp.o
[ 21%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/debug.cpp.o
[ 21%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/debye_hueckel.cpp.o
[ 21%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/dihedral.cpp.o
[ 21%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/domain_decomposition.cpp.o
[ 23%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/dpd.cpp.o
[ 23%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/elc.cpp.o
[ 23%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/electrokinetics.cpp.o
[ 23%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/electrokinetics_pdb_parse.cpp.o
[ 23%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/energy.cpp.o
[ 24%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/errorhandling.cpp.o
[ 24%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/fene.cpp.o
[ 24%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/fft-common.cpp.o
[ 24%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/fft-dipolar.cpp.o
[ 26%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/fft.cpp.o
[ 26%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/forcecap.cpp.o
[ 26%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/forces.cpp.o
[ 26%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/galilei.cpp.o
[ 26%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/gaussian.cpp.o
[ 27%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/gb.cpp.o
[ 27%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/ghmc.cpp.o
[ 27%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/ghosts.cpp.o
[ 27%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/global.cpp.o
[ 28%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/grid.cpp.o
[ 28%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/halo.cpp.o
[ 28%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/harmonic.cpp.o
[ 28%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/harmonic_dumbbell.cpp.o
[ 28%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/hat.cpp.o
[ 30%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/hertzian.cpp.o
[ 30%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/iccp3m.cpp.o
[ 30%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/immersed_boundaries.cpp.o
[ 30%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/initialize.cpp.o
[ 31%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/integrate.cpp.o
[ 31%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/interaction_data.cpp.o
[ 31%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/io/mpiio/mpiio.cpp.o
[ 31%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/lattice.cpp.o
[ 31%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/layered.cpp.o
[ 32%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/lb-d3q19.cpp.o
[ 32%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/lb.cpp.o
[ 32%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/lbboundaries.cpp.o
[ 32%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/lbgpu.cpp.o
[ 32%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/lj.cpp.o
[ 34%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/ljcos.cpp.o
[ 34%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/ljcos2.cpp.o
[ 34%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/ljgen.cpp.o
[ 34%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/maggs.cpp.o
[ 35%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/magnetic_non_p3m_methods.cpp.o
[ 35%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/mdlc_correction.cpp.o
[ 35%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/metadynamics.cpp.o
[ 35%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/minimize_energy.cpp.o
[ 35%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/mmm-common.cpp.o
[ 36%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/mmm1d.cpp.o
[ 36%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/mmm2d.cpp.o
[ 36%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/molforces.cpp.o
[ 36%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/morse.cpp.o
[ 38%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nemd.cpp.o
[ 38%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/npt.cpp.o
[ 38%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nsquare.cpp.o
[ 38%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/p3m-common.cpp.o
[ 38%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/p3m-dipolar.cpp.o
[ 39%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/p3m.cpp.o
[ 39%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/p3m_gpu.cpp.o
[ 39%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/partCfg_global.cpp.o
[ 39%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/particle_data.cpp.o
[ 41%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/polymer.cpp.o
[ 41%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/polynom.cpp.o
[ 41%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/pressure.cpp.o
[ 41%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/quartic.cpp.o
[ 41%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/random.cpp.o
[ 42%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/rattle.cpp.o
[ 42%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/reaction_ensemble.cpp.o
[ 42%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/reaction_field.cpp.o
[ 42%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/readpdb.cpp.o
[ 42%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/rotate_system.cpp.o
[ 43%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/rotation.cpp.o
[ 43%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/scafacos.cpp.o
[ 43%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/soft_sphere.cpp.o
[ 43%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/specfunc.cpp.o
[ 45%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/statistics.cpp.o
[ 45%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/statistics_chain.cpp.o
[ 45%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/statistics_cluster.cpp.o
[ 45%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/statistics_fluid.cpp.o
[ 45%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/steppot.cpp.o
[ 46%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/subt_lj.cpp.o
[ 46%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/swimmer_reaction.cpp.o
[ 46%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/tab.cpp.o
[ 46%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/thermalized_bond.cpp.o
[ 47%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/thermostat.cpp.o
[ 47%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/thole.cpp.o
[ 47%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/topology.cpp.o
[ 47%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/tuning.cpp.o
[ 47%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/umbrella.cpp.o
[ 49%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/utils.cpp.o
[ 49%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/virtual_sites.cpp.o
[ 49%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/config-version.cpp.o
[ 49%] Linking CXX shared library libEspressoCore.so