[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
[Gsrc-commit] trunk r3764: move packages into bio from other
|
From: |
Carl Hansen |
|
Subject: |
[Gsrc-commit] trunk r3764: move packages into bio from other |
|
Date: |
Wed, 22 Jun 2016 04:58:44 +0000 (UTC) |
|
User-agent: |
Bazaar (2.6b2) |
------------------------------------------------------------
revno: 3764
revision-id: address@hidden
parent: address@hidden
committer: address@hidden
branch nick: trunk
timestamp: Tue 2016-06-21 21:58:40 -0700
message:
move packages into bio from other
renamed:
pkg/other/bambamc/ => pkg/bio/bambamc/
bambamc-20160617200040-lqf8h520dfq0rtk7-2
pkg/other/beagle-lib/ => pkg/bio/beagle-lib/
beaglelib-20160617200040-lqf8h520dfq0rtk7-3
pkg/other/htslib/ => pkg/bio/htslib/ htslib-20160617200040-lqf8h520dfq0rtk7-5
pkg/other/seqan/ => pkg/bio/seqan/ seqan-20160617200040-lqf8h520dfq0rtk7-38
modified:
pkg/bio/htslib/Makefile makefile-20160617200040-lqf8h520dfq0rtk7-49
pkg/bio/openms/Makefile makefile-20160617195624-kwz1a09vkg4le6fu-144
pkg/gnome/atkmm/sha256sums sha256sums-20160617013746-7ygosxqw3lxxvo7f-313
pkg/gnome/brasero/Makefile makefile-20160617013746-7ygosxqw3lxxvo7f-333
pkg/gnome/caribou/sha256sums sha256sums-20160617013746-7ygosxqw3lxxvo7f-357
pkg/gnome/clutter-gtk/Makefile makefile-20160617013746-7ygosxqw3lxxvo7f-378
pkg/gnome/gdl/Makefile makefile-20160617013746-7ygosxqw3lxxvo7f-488
pkg/gnu/apl/Makefile makefile-20160617014725-uokjfnggs70iry9h-402
pkg/gnu/gcc/Makefile makefile-20160617014725-uokjfnggs70iry9h-679
pkg/gnu/gnubiff/config.mk config.mk-20160617015723-qrjaakwzpt09uc8t-1
pkg/gnu/gnuradio/Makefile makefile-20160617014725-uokjfnggs70iry9h-861
pkg/gnu/gnuradio/config.mk config.mk-20160617015900-32qqzb53tspmltt0-1
pkg/gnu/mailutils/Makefile makefile-20160617014725-uokjfnggs70iry9h-1309
=== renamed directory 'pkg/other/bambamc' => 'pkg/bio/bambamc'
=== renamed directory 'pkg/other/beagle-lib' => 'pkg/bio/beagle-lib'
=== renamed directory 'pkg/other/htslib' => 'pkg/bio/htslib'
=== modified file 'pkg/bio/htslib/Makefile'
--- a/pkg/other/htslib/Makefile 2016-06-17 20:01:53 +0000
+++ b/pkg/bio/htslib/Makefile 2016-06-22 04:58:40 +0000
@@ -28,7 +28,7 @@
CITE =
######################################################################
-
+#https://github.com/samtools/htslib/archive/develop.zip
MASTER_SITES = $(MASTER_SOURCEFORGE)
MASTER_SUBDIR = samtools/files/samtools/$(GARVERSION)/
DISTFILES = $(DISTNAME).tar.bz2
=== modified file 'pkg/bio/openms/Makefile'
--- a/pkg/bio/openms/Makefile 2016-06-17 19:57:40 +0000
+++ b/pkg/bio/openms/Makefile 2016-06-22 04:58:40 +0000
@@ -28,7 +28,7 @@
endef
LICENSE = 3-clause BSD
CITE = doi:10.1186/1471-2105-9-163
-
+#https://github.com/OpenMS/OpenMS/archive/develop.zip
######################################################################
MASTER_SITES = $(MASTER_SOURCEFORGE)
=== renamed directory 'pkg/other/seqan' => 'pkg/bio/seqan'
=== modified file 'pkg/gnome/atkmm/sha256sums'
--- a/pkg/gnome/atkmm/sha256sums 2016-06-17 19:08:15 +0000
+++ b/pkg/gnome/atkmm/sha256sums 2016-06-22 04:58:40 +0000
@@ -1,1 +1,1 @@
-bfbf846b409b4c5eb3a52fa32a13d86936021969406b3dcafd4dd05abd70f91b
download/atkmm-2.22.7.tar.xz
+ff95385759e2af23828d4056356f25376cfabc41e690ac1df055371537e458bd
download/atkmm-2.24.2.tar.xz
=== modified file 'pkg/gnome/brasero/Makefile'
--- a/pkg/gnome/brasero/Makefile 2016-06-17 19:08:15 +0000
+++ b/pkg/gnome/brasero/Makefile 2016-06-22 04:58:40 +0000
@@ -38,7 +38,7 @@
SIGFILES =
# hash =
sha256:9a5eea53e57b66de3c7c8c2393ac21a58d5afa81c6cfb16b3c7f010a3d147127
-BUILDDEPS =
+BUILDDEPS = totem-pl-parser
LIBDEPS = # glib gtk+ gstreamer gst-plugins-base libcanberra libnotify
libxml2 yelp-tools
SUGGESTS = nautilus totem-pl-parser tracker
=== modified file 'pkg/gnome/caribou/sha256sums'
--- a/pkg/gnome/caribou/sha256sums 2016-06-17 19:08:15 +0000
+++ b/pkg/gnome/caribou/sha256sums 2016-06-22 04:58:40 +0000
@@ -1,1 +1,1 @@
-aefadf125a647fc68696f4134e99ee43dca121da5de8e1edf6eab5664a9f3150
download/caribou-0.4.18.1.tar.xz
+3a6664d5698c2b62a6c1c115743630d339ac237a7324bb354f2e5d55b4bb50d9
download/caribou-0.4.20.tar.xz
=== modified file 'pkg/gnome/clutter-gtk/Makefile'
--- a/pkg/gnome/clutter-gtk/Makefile 2016-06-17 19:08:15 +0000
+++ b/pkg/gnome/clutter-gtk/Makefile 2016-06-22 04:58:40 +0000
@@ -39,7 +39,7 @@
# hash =
sha256:742ef9d68ece36cbb1b2e1a4a6fbdad932f6645360be7e6de75abbb140dfbf1d
BUILDDEPS =
-LIBDEPS = gtk+ clutter
+LIBDEPS = gtk clutter
SUGGESTS =
######################################################################
=== modified file 'pkg/gnome/gdl/Makefile'
--- a/pkg/gnome/gdl/Makefile 2016-06-17 19:08:15 +0000
+++ b/pkg/gnome/gdl/Makefile 2016-06-22 04:58:40 +0000
@@ -38,7 +38,7 @@
SIGFILES =
# hash =
sha256:53d3a3bb9b9be25b3a40c644fdbbb57a5a63ee1f5f839c2266d1cd9779360e8b
-BUILDDEPS =
+BUILDDEPS = accountsservice
LIBDEPS = # intltool librsvg gtk+
SUGGESTS =
=== modified file 'pkg/gnu/apl/Makefile'
--- a/pkg/gnu/apl/Makefile 2016-06-17 19:08:15 +0000
+++ b/pkg/gnu/apl/Makefile 2016-06-22 04:58:40 +0000
@@ -33,7 +33,7 @@
SIGFILES = $(DISTNAME).tar.gz.sig
BUILDDEPS =
-LIBDEPS = readline lapack
+LIBDEPS = readline # lapack
######################################################################
=== modified file 'pkg/gnu/gcc/Makefile'
--- a/pkg/gnu/gcc/Makefile 2016-06-17 19:08:15 +0000
+++ b/pkg/gnu/gcc/Makefile 2016-06-22 04:58:40 +0000
@@ -45,7 +45,8 @@
libquadmath.info
BUILDDEPS = gmp mpfr mpc
-LIBDEPS = zlib
+LIBDEPS =
+#zlib
######################################################################
=== modified file 'pkg/gnu/gnubiff/config.mk'
--- a/pkg/gnu/gnubiff/config.mk 2016-06-17 19:08:15 +0000
+++ b/pkg/gnu/gnubiff/config.mk 2016-06-22 04:58:40 +0000
@@ -1,4 +1,5 @@
## Configuration options for gnubiff ##
CONFIGURE_OPTS ?= --disable-gnome --disable-fam
+#CONFIGURE_OPTS ?= --disable-fam
BUILD_OPTS ?=
=== modified file 'pkg/gnu/gnuradio/Makefile'
--- a/pkg/gnu/gnuradio/Makefile 2016-06-17 19:08:15 +0000
+++ b/pkg/gnu/gnuradio/Makefile 2016-06-22 04:58:40 +0000
@@ -40,7 +40,7 @@
INSTALL_SCRIPTS = $(WORKOBJ)/cmake_install.cmake
BUILDDEPS =
-LIBDEPS = guile boost libsdl
+LIBDEPS = #guile boost libsdl
######################################################################
=== modified file 'pkg/gnu/gnuradio/config.mk'
--- a/pkg/gnu/gnuradio/config.mk 2016-06-17 19:08:15 +0000
+++ b/pkg/gnu/gnuradio/config.mk 2016-06-22 04:58:40 +0000
@@ -2,4 +2,4 @@
CONFIGURE_OPTS ?=
# might or might not be needed on your system:
-BUILD_OPTS ?= LIBS=-liconv
+BUILD_OPTS ?= LIBS="-L/opt/gsrc/lib -liconv "
=== modified file 'pkg/gnu/mailutils/Makefile'
--- a/pkg/gnu/mailutils/Makefile 2016-06-17 19:08:15 +0000
+++ b/pkg/gnu/mailutils/Makefile 2016-06-22 04:58:40 +0000
@@ -37,7 +37,8 @@
SIGFILES = $(DISTNAME).tar.gz.sig
BUILDDEPS = libtool
-LIBDEPS = gettext gdbm readline ncurses gnutls guile m4 pam
+LIBDEPS = gettext gdbm readline ncurses gnutls guile m4
+#pam
######################################################################
| [Prev in Thread] |
Current Thread |
[Next in Thread] |
- [Gsrc-commit] trunk r3764: move packages into bio from other,
Carl Hansen <=