[Gsrc-commit] trunk r4593: update ncbi-blast to 2.6.0

[Carl Hansen]

------------------------------------------------------------
revno: 4593
revision-id: address@hidden
parent: address@hidden
committer: address@hidden
branch nick: trunk
timestamp: Wed 2017-07-19 00:07:01 -0700
message:
  update ncbi-blast to 2.6.0
removed:
  pkg/bio/ncbi-blast/files/      files-20160617195624-kwz1a09vkg4le6fu-135
  pkg/bio/ncbi-blast/files/ncbi-blast-2.2.29+-src-include-typeinfo.diff 
ncbiblast2.2.29srcin-20160617195624-kwz1a09vkg4le6fu-208
modified:
  pkg/bio/ncbi-blast/Makefile    makefile-20160617195624-kwz1a09vkg4le6fu-134
  pkg/bio/ncbi-blast/sha256sums  sha256sums-20160617195624-kwz1a09vkg4le6fu-136

=== modified file 'pkg/bio/ncbi-blast/Makefile'
--- a/pkg/bio/ncbi-blast/Makefile       2016-06-17 19:57:40 +0000
+++ b/pkg/bio/ncbi-blast/Makefile       2017-07-19 07:07:01 +0000
@@ -1,4 +1,4 @@
-# Copyright © 2014 Brandon Invergo <address@hidden>
+# Copyright © 2014, 2017 Brandon Invergo <address@hidden>
 #
 # This file is part of BioSRC.
 #
@@ -17,7 +17,7 @@
 
 NAME = BLAST+
 GARNAME = ncbi-blast
-GARVERSION = 2.2.30
+GARVERSION = 2.6.0
 HOME_URL = http://blast.ncbi.nlm.nih.gov
 DESCRIPTION = Basic Local Alignment Search Tool
 define BLURB
@@ -28,9 +28,9 @@
 CITE = doi:10.1186/1471-2105-10-421.
 
 ######################################################################
-
+# 
ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ncbi-blast-2.6.0+-src.tar.gz
 MASTER_SITES = ftp://ftp.ncbi.nlm.nih.gov/
-MASTER_SUBDIR = blast/executables/blast+/$(GARVERSION)/
+MASTER_SUBDIR = blast/executables/blast+/LATEST/
 DISTNAME = $(GARNAME)-$(GARVERSION)+-src
 DISTFILES = $(DISTNAME).tar.gz
 #PATCHFILES = $(DISTNAME)-include-typeinfo.diff
@@ -39,7 +39,7 @@
 BUILDDEPS =
 LIBDEPS =
 
-PATCHOPTS = -p3
+#PATCHOPTS = -p3
 
 ######################################################################
 
@@ -57,3 +57,5 @@
 post-install:
        cd $(packagedir)/lib && for x in *.a; do ln -s "$$x" "`basename \"$$x\" 
.a`-static.a"; done
        $(MAKECOOKIE)
+
+

=== removed directory 'pkg/bio/ncbi-blast/files'
=== removed file 
'pkg/bio/ncbi-blast/files/ncbi-blast-2.2.29+-src-include-typeinfo.diff'
--- a/pkg/bio/ncbi-blast/files/ncbi-blast-2.2.29+-src-include-typeinfo.diff     
2016-06-17 19:57:40 +0000
+++ b/pkg/bio/ncbi-blast/files/ncbi-blast-2.2.29+-src-include-typeinfo.diff     
1970-01-01 00:00:00 +0000
@@ -1,11 +0,0 @@
-diff -x config.log -x config.status -ru 
work/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistl.hpp 
work/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistl.hpp
---- work/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistl.hpp        
2013-09-06 19:29:54.000000000 +0100
-+++ work/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistl.hpp        
2014-06-06 12:19:33.273697088 +0100
-@@ -35,6 +35,7 @@
- /// The NCBI C++/STL use hints.
- 
- 
-+#include <typeinfo>
- #include <common/ncbi_export.h>
- #include <string>
- 

=== modified file 'pkg/bio/ncbi-blast/sha256sums'
--- a/pkg/bio/ncbi-blast/sha256sums     2016-06-17 19:57:40 +0000
+++ b/pkg/bio/ncbi-blast/sha256sums     2017-07-19 07:07:01 +0000
@@ -1,1 +1,1 @@
-26f72d51c81b9497f33b7274109565c36692572faef4d72377f79b7e59910e40  
download/ncbi-blast-2.2.30+-src.tar.gz
+0510e1d607d0fb4389eca50d434d5a0be787423b6850b3a4f315abc2ef19c996  
download/ncbi-blast-2.6.0+-src.tar.gz