[Gsrc-commit] trunk r8935: update hyphy to 2.5.46

[Carl Hansen]

------------------------------------------------------------
revno: 8935
revision-id: carlhansen1234@gmail.com-20230111075947-ii9138eq4wjijp63
parent: carlhansen1234@gmail.com-20230111070021-28bpqobrqg6q41l8
committer: carlhansen1234@gmail.com
branch nick: trunk
timestamp: Tue 2023-01-10 23:59:47 -0800
message:
  update hyphy to 2.5.46
modified:
  pkg/bio/hyphy/Makefile         makefile-20160617195624-kwz1a09vkg4le6fu-112
  pkg/bio/hyphy/config.mk        config.mk-20160617203024-1y1rgo7ffx9flvew-22
  pkg/bio/hyphy/sha256sums       sha256sums-20160617195624-kwz1a09vkg4le6fu-113

=== modified file 'pkg/bio/hyphy/Makefile'
--- a/pkg/bio/hyphy/Makefile    2016-06-17 19:57:40 +0000
+++ b/pkg/bio/hyphy/Makefile    2023-01-11 07:59:47 +0000
@@ -1,6 +1,8 @@
 # Copyright © 2013, 2014, 2015 Brandon Invergo <brandon@invergo.net>
+# Copyright © 2023 Carl Hansen
 #
-# This file is part of GSRC.
+# This file is part of GSRC, the GNU Source Release Collection.
+# http://www.gnu.org/software/gsrc
 #
 # GSRC is free software: you can redistribute it and/or modify it
 # under the terms of the GNU General Public License as published by
@@ -14,14 +16,18 @@
 #
 # You should have received a copy of the GNU General Public License
 # along with GSRC.  If not, see <http://www.gnu.org/licenses/>.
+#
+
+# Send bug reports and comments about GSRC problems to bug-gsrc@gnu.org
 
 NAME = HyPhy
 GARNAME = hyphy
-GARVERSION = 2.2.6
+GARVERSION = 2.5.46
 HOME_URL = http://www.hyphy.org
 DESCRIPTION = Hypothesis testing using Phylogenies
 define BLURB
-Hypothesis testing using Phylogenies
+The analysis of genetic sequences using techniques in phylogenetics,
+molecular evolution, and machine learning. GUI and shared lib.
 endef
 LICENSE = Expat
 CITE = doi:10.1093/bioinformatics/bti079
@@ -41,3 +47,5 @@
 include config.mk
 
 CMAKE_CONFIGURE_ARGS += -DINSTALL_PREFIX=$(prefix)
+
+

=== modified file 'pkg/bio/hyphy/config.mk'
--- a/pkg/bio/hyphy/config.mk   2016-06-17 20:32:01 +0000
+++ b/pkg/bio/hyphy/config.mk   2023-01-11 07:59:47 +0000
@@ -1,5 +1,5 @@
 ## Configuration options for hyphy ##
 
 CONFIGURE_OPTS ?= 
-# add the build target here (see HyPhy documentation for more information)
-BUILD_OPTS ?= MP2
+#(see HyPhy documentation for more information)
+BUILD_OPTS ?= 

=== modified file 'pkg/bio/hyphy/sha256sums'
--- a/pkg/bio/hyphy/sha256sums  2016-06-17 19:57:40 +0000
+++ b/pkg/bio/hyphy/sha256sums  2023-01-11 07:59:47 +0000
@@ -1,1 +1,1 @@
-49155a3cb91efc635c9643e0c802111443b597db735c50b0eb61716f13302302  
download/2.2.6.tar.gz
+4cfcaa1837166b0144a58e0b2a4e4b4c97161b7163622015cd0d757a4bb9ddd6  
download/2.5.46.tar.gz