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branch core-updates updated (17287d7 -> 12b0dbd)

From: Ludovic Courtès
Subject: branch core-updates updated (17287d7 -> 12b0dbd)
Date: Wed, 25 Mar 2015 21:43:30 +0000

civodul pushed a change to branch core-updates
in repository guix.

      from  17287d7   packages: Add zip archive support to 'patch-and-repack'.
      adds  f222664   substitute-binary: Fix recently-introduced regression.
      adds  8c05693   gnu: liba52: Fix source URI.
      adds  6de9dc2   gnu: wxwidgets-2: Use mirror:// URI.
      adds  1047852   gnu: lcms: Use mirror:// URI.
      adds  0e259d7   gnu: procps: Explain why a mirror:// URI isn't used.
      adds  6ea4b09   gnu: claws-mail: Use mirror:// URI.
      adds  0704788   gnu: msmtp: Use mirror:// URI.
      adds  b021a2a   gnu: Add s2tc.
      adds  3e71b9f   gnu: mesa: Add input s2tc.
      adds  4519197   gnu: mesa: Propagate inputs libxshmfence and libxfixes.
      adds  c90a50e   gnu: Add mesa-utils.
      adds  284fe31   lint: Change misleading variable name.
      adds  661c99a   lint: Report details about FTP errors.
      adds  2a31e1d   ftp-client: Switch to binary mode before using the "SIZE" 
      adds  285d8f0   gnu: Add colordiff.
      adds  a78f535   gnu: Add perl-svg.
      adds  e682c32   gnu: mesa: Fix file names passed to dlopen(3).
      adds  3e2570d   gnu: mesa: Enable more optional features.
      adds  0ff5e9e   gnu: libxrandr: Propagate more inputs.
      adds  9a5c4cd   gnu: agg: Add explanatory comment to the patch.
      adds  5bb82fd   gnu: Add URI-Find.
      adds  aaef00b   gnu: Add Catalyst-Action-REST.
      adds  ff80a4a   gnu: Add Test-LongString.
      adds  207d912   gnu: Add Carp-Assert.
      adds  622d9ad   gnu: Add Carp-Assert-More.
      adds  bab57fc   gnu: Add HTML-Form.
      adds  0cd2ab3   gnu: Add HTML-Lint.
      adds  ddc36cd   gnu: Add HTML-Tree.
      adds  c94c7ee   gnu: Add HTTP-Server-Simple.
      adds  0b1ed72   gnu: Add WWW-Mechanize.
      adds  0d991d2   gnu: Add Test-WWW-Mechanize.
      adds  715a0c5   gnu: Add Test-WWW-Mechanize-PSGI.
      adds  152ce15   gnu: Add Object-Signature.
      adds  3d4644e   gnu: Add Catalyst-Plugin-Session.
      adds  4b4fe57   gnu: Add Catalyst-Plugin-Authentication.
      adds  66f1d87   gnu: Add MooseX-Traits-Pluggable.
      adds  89a2aa3   gnu: Add CatalystX-Component-Traits.
      adds  4306f28   gnu: Add MooseX-Types-LoadableClass.
      adds  040a52f   gnu: Add Catalyst-Component-InstancePerContext.
      adds  9250391   gnu: Add Tie-IxHash.
      adds  2c157e8   gnu: Add Error.
      adds  990e811   gnu: Add IPC-ShareLite.
      adds  97c821e   gnu: Add Cache-Cache.
      adds  4e4039e   gnu: Add DBIx-Class-Cursor-Cached.
      adds  f643a6e   gnu: Add Catalyst-Model-DBIC-Schema.
      adds  0e991c2   build: Detect lack of guile.m4 at autoconf time.
      adds  a5f6065   gnu: emms: Fix incorrect substitution in 
      adds  ec0339c   doc: Add section about the test suite.
      adds  fa27571   gnu: emacs: Change a couple of input labels.
      adds  4fd540b   gnu: Add emacs-no-x.
      adds  2d32d15   gnu: Use emacs-no-x when we just want to byte-compile 
      adds  2d1d2dd   services: guix-service: Add 'lsof' and 'lsh' to 
guix-daemon's $PATH.
      adds  df15d17   gnu: flint: Propagate inputs gmp and mpfr.
      adds  480d19e   gnu: arb: Propagate input flint.
      adds  b42c875   gnu: flint: Update to 2.4.5.
      adds  2775b61   gnu: Add Tie-ToObject.
      adds  c666dc3   gnu: Add Data-Visitor.
      adds  cd39d81   gnu: Add Catalyst-Action-RenderView.
      adds  7c4eaa5   gnu: Add Catalyst-Plugin-ConfigLoader.
      adds  3044f72   gnu: Add MIME-Types.
      adds  4cb5426   gnu: Add Catalyst-Plugin-Static-Simple.
      adds  b6fb9f2   gnu: Add MooseX-SemiAffordanceAccessor.
      adds  9f82ae8   gnu: Add MooseX-Params-Validate.
      adds  a833ab5   gnu: Add File-ChangeNotify.
      adds  a3fe280   gnu: Add File-Copy-Recursive.
      adds  b3d9779   gnu: Add AppConfig.
      adds  c601fa1   gnu: Add Test-LeakTrace.
      adds  d4b5a5f   gnu: Add Template-Toolkit.
      adds  4a40242   gnu: Add File-Remove.
      adds  2362b3e   gnu: Add Types-Serialiser.
      adds  1699b2d   gnu: Add JSON-XS.
      adds  686805c   gnu: Add Perl JSON.
      adds  2cae038   gnu: Add Module-ScanDeps.
      adds  09e0210   gnu: Add PAR-Dist.
      adds  869ff43   gnu: perl-json-maybexs: Move to (gnu packages perl).
      adds  31831e5   gnu: perl-cpanel-json-xs: Move to (gnu packages perl).
      adds  ff31136   gnu: Add YAML-Tiny.
      adds  fda4548   gnu: Add Module-Install.
      adds  bdec322   gnu: Add Catalyst-Devel.
      adds  ac85b51   gnu: arb: Update to 2.3.0.
      adds  9eeb3d8   guix package: '-s' displays different packages that have 
the same location.
      adds  051edc9   guix package: '-s' sorts packages by name, then by 
      adds  f6f499b   gnu: lv2-mda-piano: change source URL.
      adds  594a362   gnu: python-pygobject: use home page of 3.x series.
      adds  0f49d7b   gnu: Add python2-pygobject.
      adds  e5ffe52   gnu: calibre: Update to 2.22.0.
      adds  3c76a81   gnu: openssl: Update to 1.0.2a.
      adds  9d297fa   gnu: gtk+-2: build gobject introspection typelib file.
      adds  38829ea   gnu: Add mplayer2.
      adds  d13586b   gnu: Add the-silver-searcher.
      adds  a9a8f06   Revert "gnu: Add sdcv."
      adds  2924f0d   gexp: Add identity compiler for derivations.
      adds  accb682   gexp: Allow <gexp-input> objects in #:allowed-references.
      adds  607e1b5   gexp: Ignore nested gexps in macro expansion.
      adds  1123759   gexp: Fix handling of nativeness in nested gexps.
      adds  4d58122   store: Default to a non-empty list of substituters.
      adds  cd15ad8   gnu: Add utf8proc.
      adds  e73b49f   gnu: Add openblas.
      adds  f9e62ad   gnu: icedtea6: patch ant shebang in unpack phase
      adds  6f27f37   gnu: icedtea6: patch hardcoded objcopy path.
      adds  4d80586   gnu: icedtea6: patch patches in separate build phase.
      adds  3893c80   gnu: icedtea6: Rename ‘set-paths’ phase to 
      adds  18f3c32   gnu: icedtea6: Do not set CC and LD_LIBRARY_PATH.
      adds  6b2bad4   gnu: icedtea6: remove commented substitution.
      adds  2742f87   gnu: Add SuiteSparse.
      adds  61a529b   gnu: Add double-conversion.
      adds  aa5fac3   gnu: Add Julia.
      adds  ef5cbf9   gnu: Add python-h5py and python2-h5py.
      adds  83bb3a3   gnu: sdl: Allow dlopen for OpenGL.
      adds  07780c7   gnu: sdl: Explicitly use mesa as OpenGL driver.
      adds  69383a4   gnu: bigloo: Use Emacs with X11 support.
      adds  87db655   Remove unused patchelf inputs.
      adds  0561e9a   substitute-binary: Allow callers to specify the size of a 
      adds  d3a6520   substitute-binary: Pipeline HTTP requests instead of 
using threads.
      adds  cb043c2   substitute-binary: Remove thread-safe 'regexp-exec' 
      adds  1f8ad12   gnu: geiser: Update to 0.7.
      adds  9586011   gnu: geiser: Make description more concise and less 
      adds  e2e2135   gnu: guix: Update snapshot.
      adds  19ee920   gnu: Add python2-pbcore.
      adds  ad641d5   gnu: Add python2-bx-python.
      adds  2c16316   gnu: Add pbtranscript-tofu.
      adds  b655b21   gnu: calibre: Add a patch to avoid automatic checking for 
      adds  c7d1d88   derivations: Don't invoke the substituter when an item is 
already in store.
      adds  1f43445   gnu: python: Do not use patchelf.
      adds  3681db5   derivations: Add a 'cut?' parameter to 
      adds  c3a450f   derivations: 'substitution-oracle' now ignores sub-trees 
that are valid.
      adds  2c74fde   Rename 'guix substitute-binary' to 'guix substitute'.
      adds  614c218   substitute: Rename cache directory from 
"substitute-binary" to "substitute".
       new  25d5b70   Merge branch 'master' into core-updates
       new  12b0dbd   gnu: cross-base: Make the libc static-bash bug more 

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.

Summary of changes:
 .gitignore                                         |    2 +-                                        |    4 +-                                   |    4 +-                                       |    5 +-                                          |    2 +-
 doc/guix.texi                                      |   52 ++-                                      |    3 +
 gnu/packages/algebra.scm                           |   17 +-
 gnu/packages/audio.scm                             |    2 +-
 gnu/packages/bioinformatics.scm                    |  119 ++++
 gnu/packages/code.scm                              |   57 ++-
 gnu/packages/cross-base.scm                        |    5 +
 gnu/packages/databases.scm                         |   29 +-
 gnu/packages/dictionaries.scm                      |   47 +--
 gnu/packages/ebook.scm                             |    7 +-
 gnu/packages/emacs.scm                             |   64 +-
 gnu/packages/ghostscript.scm                       |    3 +-
 gnu/packages/gl.scm                                |  144 ++++-
 gnu/packages/glib.scm                              |   12 +-
 gnu/packages/gtk.scm                               |    4 +-
 gnu/packages/idutils.scm                           |    4 +-
 gnu/packages/java.scm                              |  172 +++---
 gnu/packages/julia.scm                             |  172 +++++
 gnu/packages/linux.scm                             |    2 +
 gnu/packages/mail.scm                              |    9 +-
 gnu/packages/maths.scm                             |  118 ++++-
 gnu/packages/openssl.scm                           |    4 +-
 gnu/packages/package-management.scm                |    6 +-
 gnu/packages/patches/agg-am_c_prototype.patch      |   14 +
 .../patches/calibre-no-updates-dialog.patch        |   18 +
 gnu/packages/patches/mplayer2-theora-fix.patch     |  286 ++++++++
 gnu/packages/patchutils.scm                        |   32 +-
 gnu/packages/perl.scm                              |  701 ++++++++++++++++++++
 gnu/packages/python.scm                            |  106 ++--
 gnu/packages/scheme.scm                            |    2 +-
 gnu/packages/sdl.scm                               |   12 +-
 gnu/packages/ssh.scm                               |    1 -
 gnu/packages/textutils.scm                         |   39 ++
 gnu/packages/version-control.scm                   |    2 +-
 gnu/packages/video.scm                             |  131 ++++-
 gnu/packages/web.scm                               |  595 +++++++++++++++--
 gnu/packages/wxwidgets.scm                         |    4 +-
 gnu/packages/xorg.scm                              |   12 +-
 gnu/services/base.scm                              |   13 +-
 guix/derivations.scm                               |   48 ++-
 guix/ftp-client.scm                                |    7 +-
 guix/gexp.scm                                      |   66 ++-
 guix/scripts/lint.scm                              |   27 +-
 guix/scripts/package.scm                           |   39 +-
 .../{substitute-binary.scm => substitute.scm}      |  317 ++++++---
 guix/store.scm                                     |   11 +-
 guix/tests.scm                                     |    4 +-
 guix/ui.scm                                        |    2 +-
 nix/scripts/                   |   11 -
 nix/scripts/                          |   11 +                                    |    2 +-
 tests/derivations.scm                              |   14 +
 tests/gexp.scm                                     |   23 +
 tests/store.scm                                    |   12 +-
 tests/{substitute-binary.scm => substitute.scm}    |   58 +-
 60 files changed, 3146 insertions(+), 543 deletions(-)
 create mode 100644 gnu/packages/julia.scm
 create mode 100644 gnu/packages/patches/calibre-no-updates-dialog.patch
 create mode 100644 gnu/packages/patches/mplayer2-theora-fix.patch
 rename guix/scripts/{substitute-binary.scm => substitute.scm} (75%)
 delete mode 100644 nix/scripts/
 create mode 100644 nix/scripts/
 rename tests/{substitute-binary.scm => substitute.scm} (85%)

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