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12/21: gnu: Add mcl.
From: |
Ben Woodcroft |
Subject: |
12/21: gnu: Add mcl. |
Date: |
Mon, 8 Aug 2016 12:08:59 +0000 (UTC) |
benwoodcroft pushed a commit to branch master
in repository guix.
commit 791c11d6a0214afd03ead2aab25a8852f4305405
Author: Ben Woodcroft <address@hidden>
Date: Tue Jul 12 15:56:07 2016 +1000
gnu: Add mcl.
* gnu/packages/machine-learning.scm (mcl): New variable.
---
gnu/packages/machine-learning.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/machine-learning.scm
b/gnu/packages/machine-learning.scm
index 2ccf0f2..f96672c 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -33,6 +33,7 @@
#:use-module (gnu packages dejagnu)
#:use-module (gnu packages gcc)
#:use-module (gnu packages maths)
+ #:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
#:use-module (gnu packages statistics)
@@ -200,6 +201,36 @@ Markov Models} (HMM) and algorithms: discrete, continous
emissions, basic
training, HMM clustering, HMM mixtures.")
(license license:lgpl2.0+))))
+(define-public mcl
+ (package
+ (name "mcl")
+ (version "14.137")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "http://micans.org/mcl/src/mcl-"
+ (string-replace-substring version "." "-")
+ ".tar.gz"))
+ (sha256
+ (base32
+ "15xlax3z31lsn62vlg94hkm75nm40q4679amnfg13jm8m2bnhy5m"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:configure-flags (list "--enable-blast")))
+ (inputs
+ `(("perl" ,perl)))
+ (home-page "http://micans.org/mcl/")
+ (synopsis "Clustering algorithm for graphs")
+ (description
+ "The MCL algorithm is short for the @dfn{Markov Cluster Algorithm}, a
+fast and scalable unsupervised cluster algorithm for graphs (also known as
+networks) based on simulation of (stochastic) flow in graphs.")
+ ;; In the LICENCE file and web page it says "The software is licensed
+ ;; under the GNU General Public License, version 3.", but in several of
+ ;; the source code files it suggests GPL3 or later.
+ ;; http://listserver.ebi.ac.uk/pipermail/mcl-users/2016/000376.html
+ (license license:gpl3)))
+
(define-public randomjungle
(package
(name "randomjungle")
- branch master updated (7d229e2 -> ceb62d5), Ben Woodcroft, 2016/08/08
- 03/21: gnu: Add perl-parse-yapp., Ben Woodcroft, 2016/08/08
- 04/21: gnu: Add perl-graph., Ben Woodcroft, 2016/08/08
- 07/21: gnu: Add perl-file-path., Ben Woodcroft, 2016/08/08
- 06/21: gnu: Add perl-file-slurper., Ben Woodcroft, 2016/08/08
- 02/21: gnu: Add perl-xml-writer., Ben Woodcroft, 2016/08/08
- 17/21: gnu: Add bppsuite., Ben Woodcroft, 2016/08/08
- 05/21: gnu: Add perl-graph-readwrite., Ben Woodcroft, 2016/08/08
- 12/21: gnu: Add mcl.,
Ben Woodcroft <=
- 15/21: gnu: Add bpp-phyl., Ben Woodcroft, 2016/08/08
- 20/21: gnu: Add raxml., Ben Woodcroft, 2016/08/08
- 21/21: gnu: Add roary., Ben Woodcroft, 2016/08/08
- 16/21: gnu: Add bpp-popgen., Ben Woodcroft, 2016/08/08
- 08/21: gnu: Add perl-file-grep., Ben Woodcroft, 2016/08/08
- 18/21: gnu: Add exonerate., Ben Woodcroft, 2016/08/08
- 01/21: gnu: parallel: Use full paths for executables., Ben Woodcroft, 2016/08/08
- 09/21: gnu: Add perl-array-utils., Ben Woodcroft, 2016/08/08
- 10/21: gnu: Add perl-test-files., Ben Woodcroft, 2016/08/08
- 11/21: gnu: Add perl-env-path., Ben Woodcroft, 2016/08/08