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01/02: gnu: Add r-tximport.

From: Ricardo Wurmus
Subject: 01/02: gnu: Add r-tximport.
Date: Tue, 31 Jan 2017 21:35:22 +0000 (UTC)

rekado pushed a commit to branch master
in repository guix.

commit d4af25b51bbe9980340d70ae103ec92a284e69ce
Author: Raoul Jean Pierre Bonnal <address@hidden>
Date:   Tue Dec 27 22:11:28 2016 +0100

    gnu: Add r-tximport.
 gnu/packages/bioinformatics.scm |   22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c605c58..f8f6ea1 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7800,6 +7800,28 @@ for DNA and protein sequences.  This package supports 
several sequence
 kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.")
     (license license:gpl2+)))
+(define-public r-tximport
+  (package
+    (name "r-tximport")
+    (version "1.2.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "tximport" version))
+              (sha256
+               (base32
+                "1k5a7dad6zqg936s17f6cmwgqp11x24z9zhxndsgwbscgpyhpcb0"))))
+    (build-system r-build-system)
+    (home-page "";)
+    (synopsis "Import and summarize transcript-level estimates for gene-level 
+    (description
+     "This package provides tools to import transcript-level abundance,
+estimated counts and transcript lengths, and to summarize them into matrices
+for use with downstream gene-level analysis packages.  Average transcript
+length, weighted by sample-specific transcript abundance estimates, is
+provided as a matrix which can be used as an offset for different expression
+of gene-level counts.")
+    (license license:gpl2+)))
 (define-public emboss
     (name "emboss")

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