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branch staging updated (f575efa -> c57ce31)


From: Leo Famulari
Subject: branch staging updated (f575efa -> c57ce31)
Date: Fri, 14 Apr 2017 13:23:28 -0400 (EDT)

lfam pushed a change to branch staging
in repository guix.

      from  f575efa   gnu: libva: Update to 1.8.1.
      adds  568f977   gnu: emacs-elfeed: Enable tests.
      adds  9a49129   gnu: audacity: Update to 2.1.3.
      adds  cd158a2   gnu: python-cython: Update to 0.25.2.
      adds  26bad5d   gnu: nss, nss-certs: Update to 3.30.
      adds  350a308   gnu: python-pexpect: Use address@hidden
      adds  b4dcfce   gnu: Add cifs-utils.
      adds  b98d4ec   gnu: Add python-mando-0.3.1
      adds  3e43166   gexp: 'lower-object' raises an exception when passed an 
invalid object.
      adds  76c4861   packages: Catch invalid input errors for structs.
      adds  f73bb91   tests: Adjust search-paths test following the 
introduction of aarch64.
      adds  4d40c6a   gnu: perl-dbd-pg: Update to 3.5.3.
      adds  2273b75   gnu: perl-dbd-sqlite: Update to 1.54.
      adds  dd0cfb3   gnu: perl-db-file: Update to 1.840.
      adds  84f06e5   gnu: perl-lingua-en-findnumber: Update to 1.32.
      adds  3581c35   gnu: perl-lingua-en-inflect: Update to 1.901.
      adds  e2fb341   gnu: perl-lingua-en-inflect-number: Update to 1.12.
      adds  5b5b4ed   gnu: perl-lingua-en-number-isordinal: Update to 0.05.
      adds  153ea99   gnu: perl-lingua-en-tagger: Update to 0.28.
      adds  e26f2c6   gnu: perl-email-mime: Update to 1.940.
      adds  f751b75   gnu: perl-email-simple: Update to 2.213.
      adds  f49ced6   gnu: youtube-dl: Update to 2017.04.03.
      adds  6c17422   utils: Fix handling of shell arguments for xz compression.
      adds  b7506f7   gnu: glog: Fix name demangling for GCC 5.
      adds  0d78e37   gnu: Add qjackctl.
      adds  6beaa5a   gnu: moc: Add Ogg Vorbis support.
      adds  a3dea99   gnu: python2-cython: Fix build on 32-bit platforms.
      adds  4dc1241   gnu: gnupg: Update to 2.1.20.
      adds  dcc9b6a   gnu: python-django: Update to 1.10.7 [fixes CVE-2017-7233 
and CVE-2017-7234].
      adds  33b2520   gnu: python-django: Specify CPE name.
      adds  cca9067   gnu: icecat: Re-enable parallel build.
      adds  8db9471   gnu: icecat: Use bundled ICU to avoid crashes.
      adds  1c6b2d3   build: Export register-root procedure.
      adds  f84011d   services: cuirass: Wait for networking.
      adds  01fe019   gnu: openexr: Add IlmBase include sub-directory to 
'OpenEXR.pc'.
      adds  5894b60   gnu: algebra: Re-order imports.
      adds  f0bacad   gnu: bc: Actually use readline.
      adds  dfee7da   gnu: bc: Update to 1.07.
      adds  52b2d66   gnu: kdevelop: Update to 5.1.0.
      adds  b23c1a7   download: Update the GnuPG mirror list.
      adds  fc5b128   gnu: diamond: Update to 0.8.37.
      adds  beebe43   gnu: sra-tools: Use "modify-phases" syntax.
      adds  1108a92   gnu: sra-tools: Fix glibc naming conflict.
      adds  5ae6336   import cran: Distinguish Bioconductor data packages.
      adds  cd381c3   gnu: Move audacity to audio.scm.
      adds  b28187c   Revert "gnu: bc: Update to 1.07."
      adds  79f912c   Revert "gnu: openexr: Add IlmBase include sub-directory 
to 'OpenEXR.pc'."
      adds  f37f2b8   packages: Add 'package-mapping' and base 
'package-input-rewriting' on it.
      adds  1618006   build-system/python: 'package-with-explicit-python' uses 
'package-mapping'.
      adds  a0b87ef   profiles: Generate database file for man pages.
      adds  31f1f59   doc: Add "Documentation" section.
      adds  50f4ea1   environment: Deal with single-entry search paths.
      adds  a09b45d   build: Add and export procedure 'register-root*'.
      adds  5ea69d9   system: Support the --root option in 'guix system'.
      adds  234ea3d   gnu: guile-aspell: Update to 0.4.
      adds  7295087   gnu: guile-aspell: Remove hard-coded "site/2.0" from 
$(guilesitedir).
      adds  cb5be6d   gnu: guile-aspell: Switch to Guile 2.2.
      adds  538bce2   gnu: ldc-bootstrap: Delete failing test.
      adds  aad7808   gnu: r-jsonlite: Update to 1.3.
      adds  33eb555   gnu: r-tibble: Update to 1.3.0.
      adds  67deeea   gnu: r-readr: Update to 1.1.0.
      adds  1cbb07a   gnu: Add r-desc.
      adds  bf6dcf5   gnu: Add r-commonmark.
      adds  1db2937   gnu: r-roxygen2: Update to 6.0.1.
      adds  d51f05f   gnu: r-tidyr: Update to 0.6.1.
      adds  da250f7   gnu: r-bioccheck: Update to 1.10.1.
      adds  acbeb2d   gnu: r-xvector: Update to 0.14.1.
      adds  4cd07e4   gnu: r-genomeinfodb: Update to 1.10.3.
      adds  d3812fb   gnu: r-curl: Update to 2.4.
      adds  e15f962   gnu: r-htmltable: Update to 1.9.
      adds  7ceb26e   gnu: r-rprojroot: Update to 1.2.
      adds  9aea2cd   gnu: r-lattice: Update to 0.20-35.
      adds  9704bda   gnu: r-matrix: Update to 1.2-8.
      adds  a6dcc78   gnu: r-mgcv: Update to 1.8-17.
      adds  344e474   gnu: r-survival: Update to 2.41-3.
      adds  9948b8e   gnu: r-digest: Update to 0.6.12.
      adds  69a8ed6   gnu: r-rcpp: Update to 0.12.10.
      adds  5beda28   gnu: r-stringi: Update to 1.1.3.
      adds  7267f35   gnu: r-stringr: Update to 1.2.0.
      adds  5e0fa20   gnu: r-gdtools: Update to 0.1.4.
      adds  e8988ff   gnu: r-dbi: Update to 0.6-1.
      adds  b8acb5a   gnu: r-cluster: Update to 2.0.6.
      adds  9e8fac0   gnu: r-chron: Update to 2.3-50.
      adds  10ffdb9   gnu: r-data-table: Update to 1.10.4.
      adds  c6e40db   gnu: r-ade4: Update to 1.7-6.
      adds  0fbae8e   gnu: r-xml2: Update to 1.1.1.
      adds  d05e45f   gnu: r-multitaper: Update to 1.0-13.
      adds  f1870ae   gnu: r-backports: Update to 1.0.5.
      adds  ac5e810   gnu: r-bbmisc: Update to 1.11.
      adds  0def707   gnu: r-rmarkdown: Update to 1.4.
      adds  1c27bb8   gnu: r-rsqlite: Update to 1.1-2.
      adds  fb708a1   gnu: r-xml: Update to 3.98-1.6.
      adds  1d1fbb7   gnu: r-sparsem: Update to 1.76.
      adds  82b281f   gnu: r-e1071: Update to 1.6-8.
      adds  af7a4cc   gnu: r-mvtnorm: Update to 1.0-6.
      adds  cdadca5   gnu: r-matrixstats: Update to 0.52.1.
      adds  b5d5344   gnu: r-viridislite: Update to 0.2.0.
      adds  7a8efc8   gnu: r-viridis: Update to 0.4.0.
      adds  2f44ef9   gnu: r-mixtools: Update to 1.1.0.
      adds  2fe41e0   gnu: r-pracma: Update to 2.0.4.
      adds  4c7ab03   gnu: r-vipor: Update to 0.4.5.
      adds  47f37fd   gnu: r-statmod: Update to 1.4.29.
      adds  0007e64   gnu: r-ggthemes: Update to 3.4.0.
      adds  a977576   gnu: r-mclust: Update to 5.2.3.
      adds  4328bad   gnu: r-rcppeigen: Update to 0.3.2.9.1.
      adds  da2260f   gnu: r-pbkrtest: Update to 0.4-7.
      adds  20e9775   gnu: r-ranger: Update to 0.7.0.
      adds  e8bec95   gnu: r-maldiquant: Update to 1.16.2.
      adds  57ac1d2   gnu: r-seqminer: Update to 5.7.
      adds  9ce6cb0   gnu: r-genomicfeatures: Update to 1.26.4.
      adds  25d8854   gnu: r-rtracklayer: Update to 1.34.2.
      adds  5cc3b7a   gnu: r-genomicalignments: Update to 1.10.1.
      adds  69b356e   gnu: r-annotationdbi: Update to 1.36.2.
      adds  4cd4721   gnu: r-genomicranges: Update to 1.26.4.
      adds  3506a62   gnu: r-limma: Update to 3.30.13.
      adds  e89cf15   gnu: r-variantannotation: Update to 1.20.3.
      adds  7d05eb2   gnu: r-iranges: Update to 2.8.2.
      adds  2cea968   gnu: r-s4vectors: Update to 0.12.2.
      adds  e0d7b31   gnu: r-shortread: Update to 1.32.1.
      adds  a3656b1   gnu: r-annotationforge: Update to 1.16.1.
      adds  133cba8   gnu: armadillo: Update to 7.800.2.
      adds  0685fe3   gnu: r-rcpparmadillo: Update to 0.7.700.0.0.
      adds  498d255   gnu: Remove armadillo-for-rcpparmadillo.
      adds  e18c731   gnu: r-seqinr: Update to 3.3-6.
      adds  c9dccf7   gnu: r-sourcetools: Update to 0.1.6.
      adds  05b6626   gnu: libmtp: Update to 1.1.13 [security fixes].
      adds  2c273a8   gnu: libusb: Update to 1.0.21.
      adds  fdcc916   gnu: feh: Update to 2.18.3.
      adds  2aa78c8   gnu: re2: Update to 2017-04-01.
      adds  fe418cc   gnu: armadillo: Change license to ASL 2.0.
      adds  3be4373   gnu: webkitgtk: Update to 2.16.1.
      adds  6b6aca9   gnu: flann: Move .mex file to a separate "octave" output.
      adds  9a3762a   size: Avoid '_' as a pattern variable in 'match'.
      adds  c923f83   size: Add test to multiple 'store-profile' arguments.
      adds  0715c0e   gnu: surf: Update to 2.0.
      adds  fbd6fb1   gnu: qemu: Update to 2.8.1 [security fixes].
      adds  3798269   gnu: vsearch: Update to 2.4.3.
      adds  ecc39b3   gnu: gnubik: Update to 2.4.3.
      adds  d46e9fc   gnu: myrepos: Update to 1.20170129.
      adds  d5a3e8f   gnu: myrepos: Use 'modify-phases' syntax.
      adds  6cfb860   gnu: guitarix: Disable webkit features.
      adds  f214d47   gnu: ratpoison: Update to 1.4.9.
      adds  b25d3bd   gnu: perf: Add support for C++ symbol demangling.
      adds  b0dd343   gnu: emacs-debbugs: Update to 0.14.
      adds  350cfcc   gnu: Add emacs-adaptive-wrap.
      adds  d71b758   gnu: emacs-symon: Update to 20160630.
      adds  d10fa5c   gnu: Add intel-gpu-tools.
      adds  83cfa02   pack: Add '--expression'.
      adds  5537f2d   profiles: Slightly improve the instructions in 
'etc/profile'.
      adds  1165b08   build: Include 'glibc-utf8-locales' in the binary tarball.
      adds  cf47a8a   gnu: dovecot-trees: Update to 2.1.0.
      adds  f91fcd9   syscalls: Allow mount and umount use from static Guile.
      adds  abf0880   vm: Add missing module.
      adds  4653341   gnu: khal: Update to 0.9.5.
      adds  1c8ee3f   gnu: r-stringi: Update to 1.1.5.
      adds  1d65b53   gnu: r-vegan: Update to 2.4-3.
      adds  d922c8e   monads: Use intent-revealing parameter names.
      adds  60a9fcb   monads, doc: Improve mwhen and munless documentation.
      adds  8bc2183   monads: Improve mlet, mlet*, and mbegin documentation.
      adds  725d8d2   gnu: Add gl2ps.
      adds  181170c   gnu: octave: Build with gl2ps support.
      adds  72fa666   gnu: Add you-get.
      adds  d2b51c0   gnu: Add python-defusedxml.
      adds  ccda568   gnu: Add python-openid.
      adds  e1f06e1   gnu: Add python-django-allauth.
      adds  14d8f65   gnu: Add python-django-gravatar2.
      adds  8a3741e   gnu: Add python-django-mailman3.
      adds  d99a2ad   gnu: Add postorius.
      adds  99a8c8b   gnu: python-django-mailman3: Balance parentheses for 
inputs.
      adds  f0e9fda   gnu: certbot, python-acme: Update to 0.13.0.
      adds  f26d6e4   gnu: certbot: Share python-acme's arguments.
      adds  b0eb2af   gnu: Add alpine.
      adds  b496bfe   gnu: lz4: Update to 1.7.5.
      adds  ea240de   screen: Fix info page build failure.
      adds  0bf1164   gnu: Add leafpad.
      adds  dde5831   gnu: leafpad: Fix home-page URL.
      adds  a3c5769   gnu: qjackctl: Build with modular Qt.
      adds  f3cf25c   gnu: torsocks: Patch references to 'getcap' and 'which'.
      adds  482cd36   Revert "gnu: Add python-openid."
      adds  3ca1c5e   gnu: address@hidden: Update to 4.4.60.
      adds  0ab8ff1   gnu: address@hidden: Update to 4.9.21.
      adds  c8ce351   gnu: linux-libre: Update to 4.10.9.
      adds  3420ed3   gnu: r-jsonlite: Update to 1.4.
      adds  dc8ebe4   gnu: r-biocparallel: Update to 1.8.2.
      adds  6acdff5   gnu: r-rsamtools: Update to 1.26.2.
      adds  e9e0fab   gnu: raxml: Update to 8.2.10.
      adds  6bb9c85   gnu: Add freegish.
      adds  6461c44   gnu: emacs-projectile: Update to 0.14.0.
      adds  96e98d5   gnu: nss, nss-certs: Update to 3.30.1.
      adds  5c7815f   gnu: gcl: Build with address@hidden
      adds  47fb74a   gnu: gcl: Clean up inputs.
      adds  1803f24   gnu: gcl: Use 'modify-phases' syntax.
      adds  ae792db   gnu: Add tango-icon-theme.
      adds  9ea0cda   gnu: rustc: Update to 1.16.0. gnu: cargo: Update to 
0.17.0.
      adds  8b1e572   gnu: lxde: Add leafpad.
      adds  31b7af7   gnu: jack-1: Update to 0.125.0.
      adds  c66529d   gnu: yoshimi: Update to 1.5.1.1.
      adds  f0c5856   gnu: ams-lv2: Update to 1.2.1.
      adds  3999b66   gnu: pianobar: Update to 2016.06.02.
      adds  82bf45c   gnu: mod-host: Update to 0.10.6-2-299a39774.
      adds  35f909d   gnu: gx-guvnor-lv2: Update to 0.1.
      adds  f959991   gnu: gx-suppa-tone-bender-lv2: Update to 0.1.
      adds  4396e9b   gnu: gx-hyperion-lv2: Update to 0.1.
      adds  ad67ca3   gnu: Fix build for packages inheriting from gx-guvnor-lv2.
      adds  cf44ebe   gnu: gx-voodoo-fuzz-lv2: Update to 0.1.
      adds  34a3ecf   gnu: gx-super-fuzz-lv2: Update to 0.1.
      adds  a6f39d7   gnu: gx-super-fuzz-lv2: Fix description.
      adds  3805092   gnu: gx-vintage-fuzz-master-lv2: Update to 0.1.
      adds  7421467   gnu: serd: Update to 0.26.0.
      adds  a1d419c   gnu: sord: Update to 0.16.0.
      adds  7181981   gnu: sratom: Update to 0.6.0.
      adds  b1d3bb7   gnu: suil: Update to 0.8.4.
      adds  d4d3df8   gnu: lilv: Update to 0.24.2.
      adds  f1d8156   gnu: jalv: Update to 1.6.0.
      adds  0201c5d   gnu: Add emacs-diminish.
      adds  b247fb8   gnu: Add emacs-use-package.
      adds  64463bd   gnu: gnucash: Update to 2.6.16.
      adds  d81f131   gnu: Add darcs.
      adds  0ef83ec   gnu: Add tclx.
      adds  958d357   gnu: guile-ncurses: Update to 2.2.
      adds  81eaa3f   gnu: guile-ncurses: Switch to Guile 2.2.
      adds  18d0cec   gnu: pcre2: Patch CVE-2017-7186.
      adds  a97f0ee   gnu: pcre: Patch CVE-2017-7186.
      adds  ed3a9ec   gnu: Add gpicview.
      adds  0c3953e   gnu: Move dillo to web-browsers.scm.
      adds  cd12f92   gnu: dub: Update to 1.3.0.
      adds  f0f7bf9   gnu: Add cdogs-sdl.
      adds  99bcae9   gnu: Add python-poppler-qt5.
      adds  e40335b   gnu: frescobaldi: Update to 3.0.0.
      adds  8336df0   syscalls: Add reboot.
      adds  7df4d34   syscalls: Use define-as-needed for mount and umount.
      adds  c5cd4fa   syscalls: Use define-as-needed for network-interface 
syscalls.
      adds  23e525e   syscalls: Add load-linux-module.
      adds  a5e13c3   build: Fix compilation warnings.
      adds  acf7d4a   gnu: Add emacspeak.
      adds  e79bfa1   gnu: Add Luminance HDR.
      adds  e234555   gnu: Add emacs-default-encrypt.
      adds  c1aba1a   gnu: python-paramiko: Update to 1.17.4.
      adds  b611f9c   gnu: Add Fabric.
      adds  fb4d6f6   doc: Update Python Modules subtitle to refer to Monty 
Python.
      adds  d4bcbbb   gnu: knot: Update to 2.4.3.
      adds  8ad5a20   gnu: Add emacs-strace-mode.
      adds  25e810b   gnu: Add emacs-htmlize.
      adds  efbca08   gnu: youtube-dl: Update to 2017.04.11.
      adds  69121e9   gnu: libressl: Update to 2.5.3.
      adds  0adb47b   gnu: dovecot: Update to 2.2.29 [fixes CVE-2017-2669].
      adds  0eb0fe2   gnu: jasper: Fixx CVE-2017-6850.
      adds  d04687d   gnu: Update networkmanager to version 1.6.2.
      adds  446809f   gnu: Update phonon to 4.9.1
      adds  4467c2d   gnu: Update kde-frameworks to 5.32.0
      adds  1aab5e8   gnu: kde-frameworks: No longer setenv 
CTEST_OUTPUT_ON_FAILURE.
      adds  a97f6da   gnu: emacs-default-encrypt: Update source URI.
      adds  4d6ce83   gnu: dovecot: Update to 2.2.29.1.
      adds  a7a4345   gnu: darkhttpd: Update source URI.
      adds  0ee59b8   gnu: Add emacs-xmlgen.
      adds  eea2f45   doc: Use OpenSSH instead of lsh in bare-bones template.
      adds  1fc8476   gnu: certbot, python-acme: Build documentation in 
separate phase.
      adds  4e5dbf9   gnu: nginx: Update to 1.12.0.
      adds  fc901d1   gnu: nano: Update to 2.8.1.
      adds  352074d   gnu: emacs-ivy: Update to 0.9.1.
      adds  99517d9   gnu: emacs-ag: Build and install info.
      adds  57fe07d   gnu: python-acme: Remove unused dependencies.
      adds  0128630   gnu: certbot: Remove unused dependency.
      adds  6ddf4fc   services: Define '%linux-bare-metal-service' using 
'simple-service'.
      adds  bb5cad4   file-systems: Allow for bind-mounts of named sockets.
      adds  ee29534   services: tor: Run in a container.
      adds  61b64ac   gnu: bind: Update to 9.10.4-P8 [fixes 
CVE-2017-{3136,3137,3138}].
      adds  d24b989   gnu: icecat: Add more fixes from mozilla-esr45.
      adds  098bb00   gnu: isc-dhcp: Update bundled bind to 9.9.9-P8 [security 
fixes].
      adds  efc95e7   gnu: libsamplerate: Update to 0.1.9 [fixes CVE-2017-7697].
      adds  2e37447   gnu: libsndfile: Update to 1.0.28 [fixes 
CVE-2017-{7585,7586,7741,7742}].
      adds  9dae0a7   gnu: address@hidden: Update to 4.4.61.
      adds  c8d6d51   gnu: address@hidden: Update to 4.9.22.
      adds  44fd838   gnu: linux-libre: Update to 4.10.10.
      adds  0da0f43   gnu: Add freeglut-2.8.
      adds  bd71525   gnu: Add kiki.
      adds  ca8f3f9   gnu: Add libxls.
      adds  1262a2a   gnu: emacs-company: Update to 0.9.3.
      adds  f8d69be   gnu: emacs-clojure-mode: Update to 5.4.0.
      adds  50edf7f   gnu: emacs-flycheck: Update to 30.
      adds  07716c6   gnu: emacs-zenburn-theme: Update to 2.5.
      adds  b9d38ad   gnu: postgresql: Update to 9.6.2.
      adds  83f9aa5   gnu: php: Update to 7.1.4.
      adds  4264db2   gnu: password-store: Update to 1.7.1.
      adds  33f79a7   gnu: Add bam.
      adds  b77e3a1   gnu: Add teeworlds.
      adds  e02f166   gnu: Add fillets-ng.
      adds  88eb119   gnu: mafft: Update to 7.310.
      adds  8d50a99   gnu: Add emacs-cdlatex.
      adds  116b29b   gnu: julia: Update to 0.5.1.
      adds  f252d6d   gnu: Add guile-syntax-highlight.
      adds  11e2087   build: Remove build-aux/hydra/demo-os.scm from EXTRA_DIST.
      adds  e60ee79   build-system/cargo: Remove store reference.
      adds  960887b   build: Stop building gnu/build/svg.scm.
      adds  4e644ab   gnu: emacs-company: Enable tests.
      adds  b31b015   build: Download aarch64 bootstrap binaries from 
alpha.gnu.org.
      adds  27a5c60   gnu: dub: Flesh out synopsis & description.
      adds  2ff7703   gnu: youtube-dl: Update to 2017.04.14.
      adds  ab71ea9   gnu: mysql: Update to 5.7.18.
      adds  ed8a6c1   gnu: libmpdclient: Update to 2.11.
      adds  2f64f44   gnu: ncmpc: Update to 0.27.
      adds  8439c9c   gnu: gpgme: Update to 1.9.0.
       new  c57ce31   Merge branch 'master' into staging

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 Makefile.am                                        |   9 +-
 build-aux/download.scm                             |  20 +-
 doc/guix.texi                                      | 129 +++++++-
 gnu/build/file-systems.scm                         |  23 +-
 gnu/build/linux-boot.scm                           |   2 +
 gnu/build/linux-modules.scm                        |   2 +
 gnu/build/vm.scm                                   |   1 +
 gnu/local.mk                                       |  29 +-
 gnu/packages/admin.scm                             |  92 +++++-
 gnu/packages/algebra.scm                           |  17 +-
 gnu/packages/audacity.scm                          | 103 ------
 gnu/packages/audio.scm                             | 141 ++++++--
 gnu/packages/bioinformatics.scm                    | 230 ++++++-------
 gnu/packages/build-tools.scm                       |  64 ++++
 gnu/packages/calendar.scm                          |   4 +-
 gnu/packages/certs.scm                             |   4 +-
 gnu/packages/compression.scm                       |  12 +-
 gnu/packages/databases.scm                         |  20 +-
 gnu/packages/django.scm                            |  63 +++-
 gnu/packages/dns.scm                               |   8 +-
 gnu/packages/emacs.scm                             | 351 ++++++++++++++++++--
 gnu/packages/games.scm                             | 355 ++++++++++++++++++++-
 gnu/packages/gl.scm                                |  50 +++
 gnu/packages/gnome.scm                             |  48 ++-
 gnu/packages/gnucash.scm                           |   4 +-
 gnu/packages/gnupg.scm                             |   9 +-
 gnu/packages/gnuzilla.scm                          |  29 +-
 gnu/packages/guile.scm                             |  64 +++-
 gnu/packages/image-viewers.scm                     | 102 +++++-
 gnu/packages/image.scm                             |   3 +-
 gnu/packages/julia.scm                             |   6 +-
 gnu/packages/kde-frameworks.scm                    | 308 +++++++++---------
 gnu/packages/kde.scm                               |   8 +-
 gnu/packages/language.scm                          |  20 +-
 gnu/packages/ldc.scm                               |  25 +-
 gnu/packages/libusb.scm                            |  10 +-
 gnu/packages/linux.scm                             |  13 +-
 gnu/packages/lisp.scm                              |  53 ++-
 gnu/packages/logging.scm                           |   6 +-
 gnu/packages/lxde.scm                              |   7 +-
 gnu/packages/mail.scm                              | 229 ++++++++++---
 gnu/packages/maths.scm                             |  32 +-
 gnu/packages/mpd.scm                               |   8 +-
 gnu/packages/music.scm                             | 289 +++++++++--------
 gnu/packages/nano.scm                              |   4 +-
 gnu/packages/package-management.scm                |   5 +-
 gnu/packages/password-utils.scm                    |   5 +-
 .../patches/audacity-fix-ffmpeg-binding.patch      |  32 --
 gnu/packages/patches/glog-gcc-5-demangling.patch   |  64 ++++
 .../patches/gnupg-2.1-fix-Y2038-test-failure.patch |  67 ----
 gnu/packages/patches/jasper-CVE-2017-6850.patch    | 284 +++++++++++++++++
 .../patches/kiki-level-selection-crash.patch       |  19 ++
 gnu/packages/patches/kiki-makefile.patch           |  57 ++++
 gnu/packages/patches/kiki-missing-includes.patch   |  55 ++++
 gnu/packages/patches/kiki-portability-64bit.patch  | 328 +++++++++++++++++++
 gnu/packages/patches/kio-CVE-2017-6410.patch       |  53 ---
 .../patches/luminance-hdr-qt-printer.patch         |  28 ++
 gnu/packages/patches/lz4-fix-test-failures.patch   | 136 ++++++++
 ...networkmanager-qt-activeconnection-test-1.patch |  60 ++++
 ...networkmanager-qt-activeconnection-test-2.patch |  57 ++++
 .../patches/nss-increase-test-timeout.patch        |  10 +-
 .../patches/password-store-gnupg-compat.patch      |  53 ---
 gnu/packages/patches/pcre-CVE-2017-7186.patch      |  56 ++++
 gnu/packages/patches/pcre2-CVE-2017-7186.patch     |  68 ++++
 .../patches/python-cython-fix-tests-32bit.patch    |  27 ++
 gnu/packages/patches/qemu-CVE-2017-2615.patch      |  52 ---
 gnu/packages/patches/qemu-CVE-2017-2620.patch      | 134 --------
 gnu/packages/patches/qemu-CVE-2017-2630.patch      |  47 ---
 gnu/packages/patches/qemu-CVE-2017-5667.patch      |  46 ---
 gnu/packages/patches/qemu-CVE-2017-5931.patch      |  55 ----
 .../patches/screen-fix-info-syntax-error.patch     |  47 +++
 .../patches/teeworlds-use-latest-wavpack.patch     |  84 +++++
 gnu/packages/pcre.scm                              |  13 +-
 gnu/packages/pdf.scm                               |  47 +++
 gnu/packages/php.scm                               |   4 +-
 gnu/packages/pulseaudio.scm                        |   1 +
 gnu/packages/python.scm                            |  28 +-
 gnu/packages/qemu.scm                              |  12 +-
 gnu/packages/ratpoison.scm                         |   7 +-
 gnu/packages/rdf.scm                               |  14 +-
 gnu/packages/regex.scm                             |   4 +-
 gnu/packages/rust.scm                              |  70 +++-
 gnu/packages/samba.scm                             |  47 +++
 gnu/packages/screen.scm                            |   1 +
 gnu/packages/statistics.scm                        | 258 ++++++++-------
 gnu/packages/suckless.scm                          |   6 +-
 gnu/packages/tcl.scm                               |  33 ++
 gnu/packages/text-editors.scm                      |  29 ++
 gnu/packages/tls.scm                               |  63 ++--
 gnu/packages/tor.scm                               |  16 +
 gnu/packages/version-control.scm                   | 123 ++++++-
 gnu/packages/video.scm                             |  30 +-
 gnu/packages/{dillo.scm => web-browsers.scm}       |   2 +-
 gnu/packages/web.scm                               |  37 +--
 gnu/packages/webkit.scm                            |   4 +-
 gnu/packages/xml.scm                               |  56 +++-
 gnu/services.scm                                   |  11 +-
 gnu/services/cuirass.scm                           |   2 +-
 gnu/services/networking.scm                        |  32 +-
 gnu/system/examples/bare-bones.tmpl                |   4 +-
 guix/build-system/python.scm                       |  85 +++--
 guix/build/cargo-build-system.scm                  |  11 +-
 guix/build/profiles.scm                            |   6 +-
 guix/build/syscalls.scm                            | 169 ++++++----
 guix/download.scm                                  |   2 +-
 guix/gexp.scm                                      |  25 +-
 guix/import/cran.scm                               |  31 +-
 guix/monads.scm                                    |  25 +-
 guix/packages.scm                                  |  68 ++--
 guix/profiles.scm                                  |  79 +++++
 guix/scripts/build.scm                             |   7 +-
 guix/scripts/environment.scm                       |   4 +-
 guix/scripts/pack.scm                              |  31 +-
 guix/scripts/size.scm                              |   8 +-
 guix/scripts/system.scm                            |  31 +-
 guix/ui.scm                                        |   5 +
 guix/utils.scm                                     |   6 +-
 tests/gexp.scm                                     |   7 +
 tests/packages.scm                                 |  35 ++
 tests/search-paths.scm                             |   2 +-
 tests/size.scm                                     |  18 +-
 121 files changed, 4735 insertions(+), 1809 deletions(-)
 delete mode 100644 gnu/packages/audacity.scm
 create mode 100644 gnu/packages/build-tools.scm
 delete mode 100644 gnu/packages/patches/audacity-fix-ffmpeg-binding.patch
 create mode 100644 gnu/packages/patches/glog-gcc-5-demangling.patch
 delete mode 100644 gnu/packages/patches/gnupg-2.1-fix-Y2038-test-failure.patch
 create mode 100644 gnu/packages/patches/jasper-CVE-2017-6850.patch
 create mode 100644 gnu/packages/patches/kiki-level-selection-crash.patch
 create mode 100644 gnu/packages/patches/kiki-makefile.patch
 create mode 100644 gnu/packages/patches/kiki-missing-includes.patch
 create mode 100644 gnu/packages/patches/kiki-portability-64bit.patch
 delete mode 100644 gnu/packages/patches/kio-CVE-2017-6410.patch
 create mode 100644 gnu/packages/patches/luminance-hdr-qt-printer.patch
 create mode 100644 gnu/packages/patches/lz4-fix-test-failures.patch
 create mode 100644 
gnu/packages/patches/networkmanager-qt-activeconnection-test-1.patch
 create mode 100644 
gnu/packages/patches/networkmanager-qt-activeconnection-test-2.patch
 delete mode 100644 gnu/packages/patches/password-store-gnupg-compat.patch
 create mode 100644 gnu/packages/patches/pcre-CVE-2017-7186.patch
 create mode 100644 gnu/packages/patches/pcre2-CVE-2017-7186.patch
 create mode 100644 gnu/packages/patches/python-cython-fix-tests-32bit.patch
 delete mode 100644 gnu/packages/patches/qemu-CVE-2017-2615.patch
 delete mode 100644 gnu/packages/patches/qemu-CVE-2017-2620.patch
 delete mode 100644 gnu/packages/patches/qemu-CVE-2017-2630.patch
 delete mode 100644 gnu/packages/patches/qemu-CVE-2017-5667.patch
 delete mode 100644 gnu/packages/patches/qemu-CVE-2017-5931.patch
 create mode 100644 gnu/packages/patches/screen-fix-info-syntax-error.patch
 create mode 100644 gnu/packages/patches/teeworlds-use-latest-wavpack.patch
 rename gnu/packages/{dillo.scm => web-browsers.scm} (98%)



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