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33/39: gnu: Add r-qvalue.
From: |
Ricardo Wurmus |
Subject: |
33/39: gnu: Add r-qvalue. |
Date: |
Thu, 17 Aug 2017 11:27:37 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 212f61204030ce2a36e4770607bc4e17df08ebbe
Author: Ricardo Wurmus <address@hidden>
Date: Tue Aug 15 15:13:53 2017 +0200
gnu: Add r-qvalue.
* gnu/packages/bioinformatics.scm (r-qvalue): New variable.
---
gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5dbf2ce..2728d7a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9319,6 +9319,35 @@ formats can be used as input to fastseg like expression
set objects for
microarrays or GRanges for sequencing data.")
(license license:lgpl2.0+)))
+(define-public r-qvalue
+ (package
+ (name "r-qvalue")
+ (version "2.8.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "qvalue" version))
+ (sha256
+ (base32
+ "1dxdwa767a9r8n61r272ypi09qblcdfpzzwkmri74y5mbp1r3y4i"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-ggplot2" ,r-ggplot2)
+ ("r-reshape2" ,r-reshape2)))
+ (home-page "http://github.com/jdstorey/qvalue")
+ (synopsis "Q-value estimation for false discovery rate control")
+ (description
+ "This package takes a list of p-values resulting from the simultaneous
+testing of many hypotheses and estimates their q-values and local @dfn{false
+discovery rate} (FDR) values. The q-value of a test measures the proportion
+of false positives incurred when that particular test is called significant.
+The local FDR measures the posterior probability the null hypothesis is true
+given the test's p-value. Various plots are automatically generated, allowing
+one to make sensible significance cut-offs. The software can be applied to
+problems in genomics, brain imaging, astrophysics, and data mining.")
+ ;; Any version of the LGPL.
+ (license license:lgpl3+)))
+
(define htslib-for-sambamba
(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
(package
- 38/39: gnu: Add r-suppdists., (continued)
- 38/39: gnu: Add r-suppdists., Ricardo Wurmus, 2017/08/17
- 17/39: gnu: Add r-reshape., Ricardo Wurmus, 2017/08/17
- 03/39: gnu: Add r-auc., Ricardo Wurmus, 2017/08/17
- 05/39: gnu: Add r-shape., Ricardo Wurmus, 2017/08/17
- 07/39: gnu: Add r-circlize., Ricardo Wurmus, 2017/08/17
- 21/39: gnu: Add r-sp., Ricardo Wurmus, 2017/08/17
- 19/39: gnu: Add r-ggally., Ricardo Wurmus, 2017/08/17
- 23/39: gnu: Add r-rmtstat., Ricardo Wurmus, 2017/08/17
- 25/39: gnu: Add r-distillery., Ricardo Wurmus, 2017/08/17
- 28/39: gnu: Add r-inline., Ricardo Wurmus, 2017/08/17
- 33/39: gnu: Add r-qvalue.,
Ricardo Wurmus <=
- 37/39: gnu: Add r-energy., Ricardo Wurmus, 2017/08/17
- 35/39: gnu: Add r-limsolve., Ricardo Wurmus, 2017/08/17
- 29/39: gnu: Add r-bbmle., Ricardo Wurmus, 2017/08/17
- 31/39: gnu: Add r-emdbook., Ricardo Wurmus, 2017/08/17
- 32/39: gnu: Add r-fastseg., Ricardo Wurmus, 2017/08/17
- 34/39: gnu: Add r-lpsolve., Ricardo Wurmus, 2017/08/17
- 39/39: gnu: Add r-ksamples., Ricardo Wurmus, 2017/08/17