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01/01: gnu: f-seq: Fix location of commons-cli.jar.
From: |
Ricardo Wurmus |
Subject: |
01/01: gnu: f-seq: Fix location of commons-cli.jar. |
Date: |
Wed, 18 Oct 2017 17:54:22 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit c0770feedd08b6e479125dae32c7fe3411adf455
Author: Ricardo Wurmus <address@hidden>
Date: Wed Oct 18 23:53:18 2017 +0200
gnu: f-seq: Fix location of commons-cli.jar.
* gnu/packages/bioinformatics.scm (f-seq)[arguments]: Fix location of
commons-cli.jar in the wrapper script.
---
gnu/packages/bioinformatics.scm | 9 +++++++--
1 file changed, 7 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 32603ae..d15f6fd 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10035,13 +10035,18 @@ browser.")
#:phases
(modify-phases %standard-phases
(replace 'install
- (lambda* (#:key outputs #:allow-other-keys)
+ (lambda* (#:key inputs outputs #:allow-other-keys)
(let* ((target (assoc-ref outputs "out"))
(doc (string-append target "/share/doc/f-seq/")))
(mkdir-p target)
(mkdir-p doc)
(substitute* "bin/linux/fseq"
- (("java") (which "java")))
+ (("java") (which "java"))
+ (("\\$REALDIR/../lib/commons-cli-1.1.jar")
+ (string-append (assoc-ref inputs "java-commons-cli")
+ "/share/java/commons-cli.jar"))
+ (("REALDIR=.*")
+ (string-append "REALDIR=" target "/bin\n")))
(install-file "README.txt" doc)
(install-file "bin/linux/fseq" (string-append target "/bin"))
(install-file "build~/fseq.jar" (string-append target "/lib"))