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09/16: gnu: Add Diversitree.
From: |
Leo Famulari |
Subject: |
09/16: gnu: Add Diversitree. |
Date: |
Thu, 15 Mar 2018 11:01:39 -0400 (EDT) |
lfam pushed a commit to branch master
in repository guix.
commit 32cbbac11a8d8d656ed795865d88a6eeb3877dbe
Author: Leo Famulari <address@hidden>
Date: Sat Feb 17 17:06:26 2018 -0500
gnu: Add Diversitree.
* gnu/packages/bioinformatics.scm (r-diversitree): New variable.
---
gnu/packages/bioinformatics.scm | 32 ++++++++++++++++++++++++++++++++
1 file changed, 32 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 567dd2c..3d754bf 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9,6 +9,7 @@
;;; Copyright © 2016, 2018 Raoul Bonnal <address@hidden>
;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <address@hidden>
;;; Copyright © 2017 Arun Isaac <address@hidden>
+;;; Copyright © 2018 Joshua Sierles, Nextjournal <address@hidden>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -12855,3 +12856,34 @@ data of bisulfite experiments; it produces reports on
aggregate methylation
and coverage and can be used to produce information on differential
methylation and segmentation.")
(license license:gpl3+)))
+
+(define-public r-diversitree
+ (package
+ (name "r-diversitree")
+ (version "0.9-10")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "diversitree" version))
+ (sha256
+ (base32
+ "0gh4rcrp0an3jh8915i1fsxlgyfk7njywgbd5ln5r2jhr085kpz7"))))
+ (build-system r-build-system)
+ (native-inputs
+ `(("gfortran" ,gfortran)))
+ (inputs `(("fftw" ,fftw) ("gsl" ,gsl)))
+ (propagated-inputs
+ `(("r-ape" ,r-ape)
+ ("r-desolve" ,r-desolve)
+ ("r-rcpp" ,r-rcpp)
+ ("r-suplex" ,r-subplex)))
+ (home-page "https://www.zoology.ubc.ca/prog/diversitree")
+ (synopsis "Comparative 'phylogenetic' analyses of diversification")
+ (description "This package contains a number of comparative
\"phylogenetic\"
+methods, mostly focusing on analysing diversification and character evolution.
+Contains implementations of \"BiSSE\" (Binary State Speciation and Extinction)
+and its unresolved tree extensions, \"MuSSE\" (Multiple State Speciation and
+Extinction), \"QuaSSE\", \"GeoSSE\", and \"BiSSE-ness\" Other included methods
+include Markov models of discrete and continuous trait evolution and constant
+rate speciation and extinction.")
+ (license license:gpl2+)))
- 02/16: gnu: Add python-plotly., (continued)
- 02/16: gnu: Add python-plotly., Leo Famulari, 2018/03/15
- 04/16: gnu: Add r-mapproj., Leo Famulari, 2018/03/15
- 07/16: gnu: Add r-subplex., Leo Famulari, 2018/03/15
- 16/16: gnu: Add python-feather-format., Leo Famulari, 2018/03/15
- 06/16: gnu: Add r-geosphere., Leo Famulari, 2018/03/15
- 03/16: gnu: Add r-maps., Leo Famulari, 2018/03/15
- 15/16: gnu: Add python-pyarrow., Leo Famulari, 2018/03/15
- 14/16: gnu: Add apache-arrow., Leo Famulari, 2018/03/15
- 11/16: gnu: Add r-ggmap., Leo Famulari, 2018/03/15
- 12/16: gnu: Add r-feather., Leo Famulari, 2018/03/15
- 09/16: gnu: Add Diversitree.,
Leo Famulari <=
- 10/16: gnu: Add r-jpeg., Leo Famulari, 2018/03/15
- 13/16: gnu: Add google-brotli., Leo Famulari, 2018/03/15