01/02: gnu: Add r-regioner.

[Leo Famulari]

lfam pushed a commit to branch master
in repository guix.

commit 183ce9884924794677eefca78cf445ada5551260
Author: Roel Janssen <address@hidden>
Date:   Thu Mar 29 14:20:20 2018 +0200

    gnu: Add r-regioner.
    
    * gnu/packages/bioconductor.scm (r-regioner): New variable.
    
    Signed-off-by: Leo Famulari <address@hidden>
---
 gnu/packages/bioconductor.scm | 32 +++++++++++++++++++++++++++++++-
 1 file changed, 31 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f557dce..09581d9 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1,5 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2018 Ricardo Wurmus <address@hidden>
+;;; Copyright © 2018 Roel Janssen <address@hidden>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -21,7 +22,9 @@
   #:use-module (guix packages)
   #:use-module (guix download)
   #:use-module (guix build-system r)
-  #:use-module (gnu packages))
+  #:use-module (gnu packages)
+  #:use-module (gnu packages statistics)
+  #:use-module (gnu packages bioinformatics))
 
 (define-public r-hpar
   (package
@@ -40,3 +43,30 @@
     (description "This package provides a simple interface to and data from
 the Human Protein Atlas project.")
     (license license:artistic2.0)))
+
+(define-public r-regioner
+  (package
+    (name "r-regioner")
+    (version "1.10.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "regioneR" version))
+       (sha256
+        (base32
+         "1vprp3l929hwzmvgskbhawfgnrymwc9n2rxd16rgagnv1dxnjxfp"))))
+    (properties `((upstream-name . "regioneR")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-memoise" ,r-memoise)
+       ("r-genomicranges" ,r-genomicranges)
+       ("r-bsgenome" ,r-bsgenome)
+       ("r-rtracklayer" ,r-rtracklayer)
+       ("r-genomeinfodb" ,r-genomeinfodb)
+       ("r-iranges" ,r-iranges)))
+    (home-page "https://bioconductor.org/packages/regioneR/";)
+    (synopsis "Association analysis of genomic regions")
+    (description "This package offers a statistical framework based on
+customizable permutation tests to assess the association between genomic
+region sets and other genomic features.")
+    (license license:artistic2.0)))