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01/02: gnu: java-picard: Delete failing build phase.
From: |
Ricardo Wurmus |
Subject: |
01/02: gnu: java-picard: Delete failing build phase. |
Date: |
Tue, 5 Jun 2018 05:27:10 -0400 (EDT) |
rekado pushed a commit to branch core-updates
in repository guix.
commit 1f94ba94082f706eac5e19d56ef6d72f54239743
Author: Ricardo Wurmus <address@hidden>
Date: Tue Jun 5 11:26:08 2018 +0200
gnu: java-picard: Delete failing build phase.
* gnu/packages/bioinformatics.scm (java-picard)[arguments]: Delete
"generate-jar-indices" phase.
---
gnu/packages/bioinformatics.scm | 2 ++
1 file changed, 2 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index dd7077a..57150ae 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3154,6 +3154,8 @@ manipulating HTS data.")
#:jdk ,icedtea-8
#:phases
(modify-phases %standard-phases
+ ;; FIXME: this phase fails with "duplicate entry:
htsjdk/samtools/AbstractBAMFileIndex$1.class"
+ (delete 'generate-jar-indices)
(add-after 'unpack 'use-our-htsjdk
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "build.xml"