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branch master updated (3b0153b -> 00a43cb)

From: Ricardo Wurmus
Subject: branch master updated (3b0153b -> 00a43cb)
Date: Wed, 5 Sep 2018 14:03:34 -0400 (EDT)

rekado pushed a change to branch master
in repository guix.

      from  3b0153b   gnu: guix-daemon: Add dependency on Guile-Gcrypt.
       new  356230d   gnu: Add r-fansi.
       new  5371865   gnu: Add r-polynom.
       new  dd954dd   gnu: Add r-gbrd.
       new  6a84697   gnu: Add r-rdpack.
       new  88e4ed5   gnu: Add r-clipr.
       new  6505016   gnu: r-chippeakanno: Update to 3.14.1.
       new  ce0e762   gnu: r-annotationforge: Update to 1.22.2.
       new  3c04375   gnu: r-biocviews: Update to 1.48.3.
       new  5728d9c   gnu: r-iranges: Update to 2.14.11.
       new  1adf459   gnu: r-edger: Update to 3.22.3.
       new  33a103a   gnu: r-variantannotation: Update to 1.26.1.
       new  688cb08   gnu: r-limma: Update to 3.36.3.
       new  1d56c79   gnu: r-genomicranges: Update to 1.32.6.
       new  a023400   gnu: r-biocparallel: Update to 1.14.2.
       new  3e61c2a   gnu: r-rsamtools: Update to 1.32.3.
       new  aea1b6f   gnu: r-delayedarray: Update to 0.6.5.
       new  f2e7982   gnu: r-rtracklayer: Update to 1.40.6.
       new  ad2ed8d   gnu: r-genomicfeatures: Update to 1.32.2.
       new  48b21f8   gnu: r-seqminer: Update to 6.1.
       new  4ee8c37   gnu: r-maldiquant: Update to 1.18.
       new  07bd90c   gnu: r-msnbase: Update to 2.6.3.
       new  6f6aef8   gnu: r-seurat: Update to 2.3.4.
       new  c273bcd   gnu: r-diffusionmap: Update to 1.1-0.1.
       new  eb251fe   gnu: r-igraph: Update to 1.2.2.
       new  3c55304   gnu: r-edaseq: Update to 2.14.1.
       new  ff7c7d6   gnu: r-keggrest: Update to 1.20.1.
       new  70daf93   gnu: r-biovizbase: Update to 1.28.2.
       new  16527f1   gnu: r-ggbio: Update to 1.28.5.
       new  e69c07e   gnu: r-hdf5array: Update to 1.8.1.
       new  8e44ff0   gnu: r-scater: Update to 1.8.4.
       new  f077174   gnu: r-scran: Update to 1.8.4.
       new  1ec1989   gnu: r-httpuv: Update to 1.4.5.
       new  4f8247b   gnu: Add r-pkgbuild.
       new  e362be8   gnu: Add r-pkgload.
       new  97c81cc   gnu: r-stringi: Update to 1.2.4.
       new  3bf3902   gnu: r-scales: Update to 1.0.0.
       new  2a96a09   gnu: r-evaluate: Update to 0.11.
       new  3299bc1   gnu: r-yaml: Update to 2.2.0.
       new  6b02569   gnu: r-dbplyr: Update to 1.2.2.
       new  7f38b31   gnu: r-xtable: Update to 1.8-3.
       new  9b7e8df   gnu: r-ade4: Update to 1.7-13.
       new  2848c52   gnu: r-roxygen2: Update to 6.1.0.
       new  19cb93b   gnu: r-git2r: Update to 0.23.0.
       new  41f6685   gnu: r-rcpparmadillo: Update to
       new  2aafa73   gnu: r-xml: Update to 3.98-1.16.
       new  e926159   gnu: r-e1071: Update to 1.7-0.
       new  eefa7c7   gnu: r-r-utils: Update to 2.7.0.
       new  e2a2c33   gnu: r-r-rsp: Update to 0.43.0.
       new  195eec7   gnu: r-matrixstats: Update to 0.54.0.
       new  88cb7aa   gnu: r-plotly: Update to 4.8.0.
       new  5dbe7aa   gnu: r-googlesheets: Update to 0.3.0.
       new  c183fa2   gnu: Add r-officer.
       new  bfee9ce   gnu: Add r-snakecase.
       new  de059e4   gnu: Add r-prediction.
       new  cfc0631   gnu: Add r-sjlabelled.
       new  1f560b9   gnu: Add r-sjmisc.
       new  aaed237   gnu: Add r-nortest.
       new  0fd7d59   gnu: Add r-moonbook.
       new  9070832   Revert "gnu: ghc-base-compat: Update to 0.10.4."
       new  f9f4578   Revert "gnu: ghc-tasty: Update to"
       new  78f2c08   gnu: r-rmarkdown: Use latest version of Pandoc.
       new  589bd1c   gnu: Add r-flextable.
       new  cb96d81   gnu: r-doby: Update to 4.6-2.
       new  2cdd9d4   gnu: r-reticulate: Update to 1.10.
       new  e3c1e93   gnu: r-reprex: Update to 0.2.0.
       new  b72de5b   gnu: r-callr: Update to 3.0.0.
       new  b00e8ae   gnu: r-glue: Update to 1.3.0.
       new  c73752c   gnu: r-pls: Update to 2.7-0.
       new  2d2b95d   gnu: r-ipred: Update to 0.9-7.
       new  45c156b   gnu: r-broom: Update to 0.5.0.
       new  dc66835   gnu: Add r-ucminf.
       new  b8f6e2f   gnu: Add r-ordinal.
       new  e7630cc   gnu: r-jomo: Update to 2.6-4.
       new  a726559   gnu: r-pan: Update to 1.6.
       new  1b3b2a7   gnu: r-mice: Update to 3.3.0.
       new  69bf449   gnu: r-xts: Update to 0.11-0.
       new  6f5b157   gnu: r-pillar: Update to 1.3.0.
       new  d97d98e   gnu: r-tinytex: Update to 0.8.
       new  e32368c   gnu: r-metap: Update to 1.0.
       new  be5642e   gnu: r-statnet-common: Update to 4.1.4.
       new  1fe9919   gnu: r-tsa: Update to 1.2.
       new  1995082   gnu: r-heatmaply: Update to 0.15.2.
       new  7a96c4e   gnu: r-fnn: Update to
       new  1213222   gnu: r-maptools: Update to 0.9-3.
       new  2e6909b   gnu: r-later: Update to 0.7.4.
       new  a9b02dd   gnu: r-codedepends: Update to 0.6.5.
       new  caaec88   gnu: r-ggpubr: Update to 0.1.8.
       new  5dfe491   gnu: r-graph: Move from bioinformatics to bioconductor.
       new  a207bca   gnu: r-codedepends: Move from cran to bioconductor.
       new  c0608f8   gnu: r-adaptivesparsity: Update to 1.6.
       new  c28d8d8   gnu: r-kernlab: Update to 0.9-27.
       new  8da236a   gnu: r-gtools: Update to 3.8.1.
       new  f0519c8   gnu: r-zoo: Update to 1.8-3.
       new  e5db689   gnu: r-ztable: Update to 0.2.0.
       new  314e8e7   gnu: r-ggthemes: Update to 4.0.1.
       new  8e499d7   gnu: r-rann: Update to 2.6.
       new  0d279d6   gnu: r-robustbase: Update to 0.93-2.
       new  f33a474   gnu: r-modelmetrics: Update to 1.2.0.
       new  dff5640   gnu: r-rcas: Use standard version of ghc-pandoc-citeproc.
       new  ca248f1   gnu: pigx-rnaseq: Use latest version of Pandoc.
       new  7cd40c8   gnu: pigx-chipseq: Use latest version of Pandoc.
       new  c2b4f81   gnu: pigx-bsseq: Use latest version of Pandoc.
       new  00a43cb   gnu: pigx-scrnaseq: Use latest version of Pandoc.

The 103 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.

Summary of changes:
 gnu/packages/bioconductor.scm     |  51 +++-
 gnu/packages/bioinformatics.scm   | 166 ++++-------
 gnu/packages/cran.scm             | 583 ++++++++++++++++++++++++++++++++------
 gnu/packages/graph.scm            |   8 +-
 gnu/packages/haskell-check.scm    |   7 +-
 gnu/packages/haskell.scm          |  31 +-
 gnu/packages/machine-learning.scm |  12 +-
 gnu/packages/statistics.scm       | 137 +++++----
 gnu/packages/web.scm              |   8 +-
 9 files changed, 710 insertions(+), 293 deletions(-)

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