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11/16: gnu: Add python-intervaltree.
From: |
Ricardo Wurmus |
Subject: |
11/16: gnu: Add python-intervaltree. |
Date: |
Mon, 10 Sep 2018 10:51:24 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit a9d496b353e71f22e5ace5bff9319fc74dfb6643
Author: Ricardo Wurmus <address@hidden>
Date: Wed Sep 5 16:00:01 2018 +0200
gnu: Add python-intervaltree.
* gnu/packages/bioinformatics.scm (python-intervaltree): New variable.
---
gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6580cac..dd8ed72 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13504,3 +13504,31 @@ reference transcripts provided in a annotation file
(also in GTF/GFF3 format).
(list
license:expat ;license for gffcompare
license:artistic2.0))))) ;license for gclib
+
+(define-public python-intervaltree
+ (package
+ (name "python-intervaltree")
+ (version "2.1.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "intervaltree" version))
+ (sha256
+ (base32
+ "02w191m9zxkcjqr1kv2slxvhymwhj3jnsyy3a28b837pi15q19dc"))))
+ (build-system python-build-system)
+ ;; FIXME: error when collecting tests
+ (arguments '(#:tests? #f))
+ (propagated-inputs
+ `(("python-sortedcontainers" ,python-sortedcontainers)))
+ (native-inputs
+ `(("python-pytest" ,python-pytest)))
+ (home-page "https://github.com/chaimleib/intervaltree")
+ (synopsis "Editable interval tree data structure")
+ (description
+ "This package provides a mutable, self-balancing interval tree
+implementation for Python. Queries may be by point, by range overlap, or by
+range envelopment. This library was designed to allow tagging text and time
+intervals, where the intervals include the lower bound but not the upper
+bound.")
+ (license license:asl2.0)))
- branch master updated (82d5c7c -> 5bfa751), Ricardo Wurmus, 2018/09/10
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