144/151: gnu: r-scater: Update to 1.10.0.

[Ricardo Wurmus]

rekado pushed a commit to branch master
in repository guix.

commit 48f27914966b00958dc9d4b26fd24a6a7f1874d1
Author: Ricardo Wurmus <address@hidden>
Date:   Wed Nov 7 12:19:04 2018 +0100

    gnu: r-scater: Update to 1.10.0.
    
    * gnu/packages/bioinformatics.scm (r-scater): Update to 1.10.0.
    [propagated-inputs]: Add r-biocparallel; remove r-biobase, r-data-table,
    r-edger, r-limma, r-rhdf5, r-rjson, r-shiny, r-shinydashboard, and 
r-tximport.
---
 gnu/packages/bioinformatics.scm | 14 +++-----------
 1 file changed, 3 insertions(+), 11 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d8b2488..f359983 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10959,39 +10959,31 @@ libraries.")
 (define-public r-scater
   (package
     (name "r-scater")
-    (version "1.8.4")
+    (version "1.10.0")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "scater" version))
               (sha256
                (base32
-                "173lfpas2fqsp4xxsw01wkxd4496c5p8himw9b4r9z4npxkfyv16"))))
+                "1kwa9n70c5j0xcj6nkmlkzjr63cnj78mp8nhg58n07fq1ijm4ns3"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-beachmat" ,r-beachmat)
-       ("r-biobase" ,r-biobase)
        ("r-biocgenerics" ,r-biocgenerics)
-       ("r-data-table" ,r-data-table)
+       ("r-biocparallel" ,r-biocparallel)
        ("r-delayedarray" ,r-delayedarray)
        ("r-delayedmatrixstats" ,r-delayedmatrixstats)
        ("r-dplyr" ,r-dplyr)
-       ("r-edger" ,r-edger)
        ("r-ggbeeswarm" ,r-ggbeeswarm)
        ("r-ggplot2" ,r-ggplot2)
-       ("r-limma" ,r-limma)
        ("r-matrix" ,r-matrix)
        ("r-plyr" ,r-plyr)
        ("r-rcpp" ,r-rcpp)
        ("r-reshape2" ,r-reshape2)
-       ("r-rhdf5" ,r-rhdf5)
        ("r-rhdf5lib" ,r-rhdf5lib)
-       ("r-rjson" ,r-rjson)
        ("r-s4vectors" ,r-s4vectors)
-       ("r-shiny" ,r-shiny)
-       ("r-shinydashboard" ,r-shinydashboard)
        ("r-singlecellexperiment" ,r-singlecellexperiment)
        ("r-summarizedexperiment" ,r-summarizedexperiment)
-       ("r-tximport" ,r-tximport)
        ("r-viridis" ,r-viridis)))
     (home-page "https://github.com/davismcc/scater";)
     (synopsis "Single-cell analysis toolkit for gene expression data in R")