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07/22: gnu: sra-tools: Use INVOKE.


From: Ricardo Wurmus
Subject: 07/22: gnu: sra-tools: Use INVOKE.
Date: Thu, 8 Nov 2018 04:11:12 -0500 (EST)

rekado pushed a commit to branch master
in repository guix.

commit 2e2d88539ceb52369c0f20566786603f4d368c94
Author: Ricardo Wurmus <address@hidden>
Date:   Thu Nov 8 09:12:43 2018 +0100

    gnu: sra-tools: Use INVOKE.
    
    * gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use INVOKE and
    return #T unconditionally.
---
 gnu/packages/bioinformatics.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b453b46..2947b51 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5712,8 +5712,7 @@ sequence itself can be retrieved from these databases.")
 
              ;; The 'configure' script doesn't recognize things like
              ;; '--enable-fast-install'.
-             (zero? (system*
-                     "./configure"
+             (invoke "./configure"
                      (string-append "--build-prefix=" (getcwd) "/build")
                      (string-append "--prefix=" (assoc-ref outputs "out"))
                      (string-append "--debug")
@@ -5731,7 +5730,8 @@ sequence itself can be retrieved from these databases.")
                      (string-append "--with-ngs-sdk-prefix="
                                     (assoc-ref inputs "ngs-sdk"))
                      (string-append "--with-hdf5-prefix="
-                                    (assoc-ref inputs "hdf5"))))))
+                                    (assoc-ref inputs "hdf5")))
+             #t))
          ;; This version of sra-tools fails to build with glibc because of a
          ;; naming conflict.  glibc-2.25/include/bits/mathcalls.h already
          ;; contains a definition of "canonicalize", so we rename it.



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