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20/21: gnu: Add r-bumphunter.
From: |
guix-commits |
Subject: |
20/21: gnu: Add r-bumphunter. |
Date: |
Wed, 13 Mar 2019 08:18:14 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 34a24f95ece7be7e5174513091ecd3c4974ce631
Author: Ricardo Wurmus <address@hidden>
Date: Wed Mar 13 13:16:48 2019 +0100
gnu: Add r-bumphunter.
* gnu/packages/bioconductor.scm (r-bumphunter): New variable.
---
gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++
1 file changed, 34 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index b29ae9d..34f5ceb 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2200,3 +2200,37 @@ expressed genes and estimation of the @dfn{False
Discovery Rate} (FDR) using
both the Significance Analysis of Microarrays (SAM) and the @dfn{Empirical
Bayes Analyses of Microarrays} (EBAM).")
(license license:lgpl2.0+)))
+
+(define-public r-bumphunter
+ (package
+ (name "r-bumphunter")
+ (version "1.24.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "bumphunter" version))
+ (sha256
+ (base32
+ "1f9vk3srffbx8jpza40nd18a4y0p0z8q40mx55dlcnddkwrqi19b"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-dorng" ,r-dorng)
+ ("r-foreach" ,r-foreach)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicfeatures" ,r-genomicfeatures)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-iterators" ,r-iterators)
+ ("r-limma" ,r-limma)
+ ("r-locfit" ,r-locfit)
+ ("r-matrixstats" ,r-matrixstats)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "https://github.com/ririzarr/bumphunter")
+ (synopsis "Find bumps in genomic data")
+ (description
+ "This package provides tools for finding bumps in genomic data in order
+to identify differentially methylated regions in epigenetic epidemiology
+studies.")
+ (license license:artistic2.0)))
- branch master updated (2b6ab17 -> 0fbaf19), guix-commits, 2019/03/13
- 06/21: gnu: Add r-shinyjs., guix-commits, 2019/03/13
- 01/21: gnu: Add r-nbpseq., guix-commits, 2019/03/13
- 02/21: gnu: Add r-ebseq., guix-commits, 2019/03/13
- 11/21: gnu: Add r-icobra., guix-commits, 2019/03/13
- 12/21: gnu: Add r-mast., guix-commits, 2019/03/13
- 05/21: gnu: Add r-shinybs., guix-commits, 2019/03/13
- 20/21: gnu: Add r-bumphunter.,
guix-commits <=
- 09/21: gnu: Add r-nor1mix., guix-commits, 2019/03/13
- 07/21: gnu: Add r-colourpicker., guix-commits, 2019/03/13
- 04/21: gnu: Add r-ihw., guix-commits, 2019/03/13
- 08/21: gnu: Add r-ggextra., guix-commits, 2019/03/13
- 10/21: gnu: Add r-beanplot., guix-commits, 2019/03/13
- 15/21: gnu: Add r-scdd., guix-commits, 2019/03/13
- 16/21: gnu: Add r-scone., guix-commits, 2019/03/13
- 18/21: gnu: Add r-illuminaio., guix-commits, 2019/03/13
- 19/21: gnu: Add r-siggenes., guix-commits, 2019/03/13
- 03/21: gnu: Add r-lpsymphony., guix-commits, 2019/03/13