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21/21: gnu: Add r-minfi.
From: |
guix-commits |
Subject: |
21/21: gnu: Add r-minfi. |
Date: |
Wed, 13 Mar 2019 08:18:14 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 0fbaf1956b090d63cb21aa45dd213ea81ac34d00
Author: Ricardo Wurmus <address@hidden>
Date: Wed Mar 13 13:17:11 2019 +0100
gnu: Add r-minfi.
* gnu/packages/bioconductor.scm (r-minfi): New variable.
---
gnu/packages/bioconductor.scm | 49 +++++++++++++++++++++++++++++++++++++++++++
1 file changed, 49 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 34f5ceb..79eab6b 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2234,3 +2234,52 @@ Bayes Analyses of Microarrays} (EBAM).")
to identify differentially methylated regions in epigenetic epidemiology
studies.")
(license license:artistic2.0)))
+
+(define-public r-minfi
+ (package
+ (name "r-minfi")
+ (version "1.28.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "minfi" version))
+ (sha256
+ (base32
+ "1sjwwqb0syngvj75saaky9y06hbxsawhhcmfvavzkhicxipafv7r"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-beanplot" ,r-beanplot)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-biostrings" ,r-biostrings)
+ ("r-bumphunter" ,r-bumphunter)
+ ("r-data-table" ,r-data-table)
+ ("r-delayedarray" ,r-delayedarray)
+ ("r-delayedmatrixstats" ,r-delayedmatrixstats)
+ ("r-genefilter" ,r-genefilter)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-geoquery" ,r-geoquery)
+ ("r-hdf5array" ,r-hdf5array)
+ ("r-illuminaio" ,r-illuminaio)
+ ("r-iranges" ,r-iranges)
+ ("r-lattice" ,r-lattice)
+ ("r-limma" ,r-limma)
+ ("r-mass" ,r-mass)
+ ("r-mclust" ,r-mclust)
+ ("r-nlme" ,r-nlme)
+ ("r-nor1mix" ,r-nor1mix)
+ ("r-preprocesscore" ,r-preprocesscore)
+ ("r-quadprog" ,r-quadprog)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-reshape" ,r-reshape)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-siggenes" ,r-siggenes)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (home-page "https://github.com/hansenlab/minfi")
+ (synopsis "Analyze Illumina Infinium DNA methylation arrays")
+ (description
+ "This package provides tools to analyze and visualize Illumina Infinium
+methylation arrays.")
+ (license license:artistic2.0)))
- 08/21: gnu: Add r-ggextra., (continued)
- 08/21: gnu: Add r-ggextra., guix-commits, 2019/03/13
- 10/21: gnu: Add r-beanplot., guix-commits, 2019/03/13
- 15/21: gnu: Add r-scdd., guix-commits, 2019/03/13
- 16/21: gnu: Add r-scone., guix-commits, 2019/03/13
- 18/21: gnu: Add r-illuminaio., guix-commits, 2019/03/13
- 19/21: gnu: Add r-siggenes., guix-commits, 2019/03/13
- 03/21: gnu: Add r-lpsymphony., guix-commits, 2019/03/13
- 13/21: gnu: Add r-monocle., guix-commits, 2019/03/13
- 17/21: gnu: Add r-geoquery., guix-commits, 2019/03/13
- 14/21: gnu: Add r-noiseq., guix-commits, 2019/03/13
- 21/21: gnu: Add r-minfi.,
guix-commits <=