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06/07: gnu: Add r-genomicscores.
From: |
guix-commits |
Subject: |
06/07: gnu: Add r-genomicscores. |
Date: |
Fri, 29 Mar 2019 12:13:55 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit e5bff3079d673d1d7816b0c30142935ef1e05791
Author: Ricardo Wurmus <address@hidden>
Date: Fri Mar 29 15:40:06 2019 +0100
gnu: Add r-genomicscores.
* gnu/packages/bioconductor.scm (r-genomicscores): New variable.
---
gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index af2d7ce..0daea68 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3271,3 +3271,34 @@ sequence motifs and amino acid sequence motifs. In
addition, it provides the
flexibility for users to customize the graphic parameters such as the font
type and symbol colors.")
(license license:gpl2+)))
+
+(define-public r-genomicscores
+ (package
+ (name "r-genomicscores")
+ (version "1.6.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "GenomicScores" version))
+ (sha256
+ (base32
+ "0lrhkcblvnki6kncwpavs01gbcz22yza6ma8zvfmbrrkfaxqzh8n"))))
+ (properties `((upstream-name . "GenomicScores")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationhub" ,r-annotationhub)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biostrings" ,r-biostrings)
+ ("r-bsgenome" ,r-bsgenome)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-xml" ,r-xml)))
+ (home-page "https://github.com/rcastelo/GenomicScores/")
+ (synopsis "Work with genome-wide position-specific scores")
+ (description
+ "This package provides infrastructure to store and access genome-wide
+position-specific scores within R and Bioconductor.")
+ (license license:artistic2.0)))
- branch master updated (9398152 -> 32e0f90), guix-commits, 2019/03/29
- 03/07: gnu: Add r-rgadem., guix-commits, 2019/03/29
- 04/07: gnu: Add r-motiv., guix-commits, 2019/03/29
- 07/07: gnu: Add r-atacseqqc., guix-commits, 2019/03/29
- 05/07: gnu: Add r-motifstack., guix-commits, 2019/03/29
- 06/07: gnu: Add r-genomicscores.,
guix-commits <=
- 01/07: gnu: Add r-bacon., guix-commits, 2019/03/29
- 02/07: gnu: Add r-preseqr., guix-commits, 2019/03/29