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01/02: gnu: Add r-birewire.
From: |
guix-commits |
Subject: |
01/02: gnu: Add r-birewire. |
Date: |
Fri, 31 May 2019 08:40:40 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 81e3de01ae2ac0e9cedc5625d25fd9b3d31e07fa
Author: Ricardo Wurmus <address@hidden>
Date: Fri May 31 14:40:20 2019 +0200
gnu: Add r-birewire.
* gnu/packages/bioconductor.scm (r-birewire): New variable.
---
gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e38d79..10a4079 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4548,3 +4548,32 @@ high-throughput sequencing data. It performs parallel
processing of entire
files and produces a report which contains a set of high-resolution
graphics.")
(license license:gpl2+)))
+
+(define-public r-birewire
+ (package
+ (name "r-birewire")
+ (version "3.16.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BiRewire" version))
+ (sha256
+ (base32
+ "1gjb18l3gq3w8zl6r5d49hw0r1kfh9f7ghv9hz6y86aniprvb518"))))
+ (properties `((upstream-name . "BiRewire")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-igraph" ,r-igraph)
+ ("r-matrix" ,r-matrix)
+ ("r-slam" ,r-slam)
+ ("r-tsne" ,r-tsne)))
+ (home-page
"https://bioconductor.org/packages/release/bioc/html/BiRewire.html")
+ (synopsis "Tools for randomization of bipartite graphs")
+ (description
+ "This package provides functions for bipartite network rewiring through N
+consecutive switching steps and for the computation of the minimal number of
+switching steps to be performed in order to maximise the dissimilarity with
+respect to the original network. It includes functions for the analysis of
+the introduced randomness across the switching steps and several other
+routines to analyse the resulting networks and their natural projections.")
+ (license license:gpl3)))