[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
01/01: gnu: bwa-meth: Capture one more reference to "bwa".
From: |
guix-commits |
Subject: |
01/01: gnu: bwa-meth: Capture one more reference to "bwa". |
Date: |
Thu, 5 Sep 2019 06:06:52 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 79c6d8781b1e3d09e1e1555675c144d821487535
Author: Ricardo Wurmus <address@hidden>
Date: Thu Sep 5 12:03:38 2019 +0200
gnu: bwa-meth: Capture one more reference to "bwa".
Reported by: Alexander.Blume <address@hidden>
* gnu/packages/bioinformatics.scm (bwa-meth)[arguments]: Capture invocation
of
"bwa index" to retain reference to "bwa" package.
---
gnu/packages/bioinformatics.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f590170..f976cad 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1767,8 +1767,8 @@ well as many of the command line options.")
(add-after 'unpack 'keep-references-to-bwa
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "bwameth.py"
- (("bwa mem")
- (string-append (which "bwa") " mem"))
+ (("bwa (mem|index)" _ command)
+ (string-append (which "bwa") " " command))
;; There's an ill-advised check for "samtools" on PATH.
(("^checkX.*") ""))
#t)))))