[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
02/21: gnu: Add r-timeseriesexperiment.
From: |
guix-commits |
Subject: |
02/21: gnu: Add r-timeseriesexperiment. |
Date: |
Sun, 15 Sep 2019 17:02:25 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 853211a51b63315b096c98371618eec243feae38
Author: Ricardo Wurmus <address@hidden>
Date: Sun Sep 15 20:42:41 2019 +0200
gnu: Add r-timeseriesexperiment.
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): New variable.
---
gnu/packages/bioconductor.scm | 39 +++++++++++++++++++++++++++++++++++++++
1 file changed, 39 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index baa1f71..b458c62 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5505,3 +5505,42 @@ computing. While wavClusteR was designed for PAR-CLIP
data analysis, it can
be applied to the analysis of other NGS data obtained from experimental
procedures that induce nucleotide substitutions (e.g. BisSeq).")
(license license:gpl2)))
+
+(define-public r-timeseriesexperiment
+ (package
+ (name "r-timeseriesexperiment")
+ (version "1.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "TimeSeriesExperiment" version))
+ (sha256
+ (base32
+ "1j11g7a2p0yk38fx6wd6152l1xynghj01pfxihalw601jwf1bl0y"))))
+ (properties
+ `((upstream-name . "TimeSeriesExperiment")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-deseq2" ,r-deseq2)
+ ("r-dplyr" ,r-dplyr)
+ ("r-dynamictreecut" ,r-dynamictreecut)
+ ("r-edger" ,r-edger)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-hmisc" ,r-hmisc)
+ ("r-limma" ,r-limma)
+ ("r-magrittr" ,r-magrittr)
+ ("r-proxy" ,r-proxy)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-tibble" ,r-tibble)
+ ("r-tidyr" ,r-tidyr)
+ ("r-vegan" ,r-vegan)
+ ("r-viridis" ,r-viridis)))
+ (home-page "https://github.com/nlhuong/TimeSeriesExperiment/")
+ (synopsis "Analysis for short time-series data")
+ (description
+ "This package is a visualization and analysis toolbox for short time
+course data which includes dimensionality reduction, clustering, two-sample
+differential expression testing and gene ranking techniques. The package also
+provides methods for retrieving enriched pathways.")
+ (license license:lgpl3+)))
- branch master updated (d77e69e -> d80a156), guix-commits, 2019/09/15
- 03/21: gnu: Add r-affydata., guix-commits, 2019/09/15
- 04/21: gnu: Add r-affycomp., guix-commits, 2019/09/15
- 02/21: gnu: Add r-timeseriesexperiment.,
guix-commits <=
- 01/21: gnu: Add r-wavcluster., guix-commits, 2019/09/15
- 05/21: gnu: Add r-affycompatible., guix-commits, 2019/09/15
- 08/21: gnu: Add r-reportingtools., guix-commits, 2019/09/15
- 06/21: gnu: Add r-affycontam., guix-commits, 2019/09/15
- 07/21: gnu: Add r-pfam-db., guix-commits, 2019/09/15
- 13/21: gnu: Add js-requirejs., guix-commits, 2019/09/15
- 18/21: gnu: Add r-oligo., guix-commits, 2019/09/15
- 19/21: gnu: Add r-genomegraphs., guix-commits, 2019/09/15
- 21/21: gnu: Add r-variancepartition., guix-commits, 2019/09/15
- 12/21: gnu: Add r-reqon., guix-commits, 2019/09/15