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branch wip-gnome-updates updated (1fa17f6 -> 2a12e9c)

From: guix-commits
Subject: branch wip-gnome-updates updated (1fa17f6 -> 2a12e9c)
Date: Fri, 6 Dec 2019 22:28:51 -0500 (EST)

kkebreau pushed a change to branch wip-gnome-updates
in repository guix.

      from  1fa17f6   Merge branch 'master' into wip-gnome-updates
      adds  f9bd82e   gnu: python-seaborn: Add patch to fix tests.
      adds  9e7cb2f   gnu: python-matplotlib: Update to 3.1.2.
      adds  a132276   gnu: python-seaborn: Disable matrix test.
      adds  255bb7b   gnu: denemo: Move some inputs to native-inputs.
      adds  f678cc9   gnu: Add glib-with-documentation.
      adds  0eb59d9   gnu: r-quadprog: Move to (gnu packages cran).
      adds  9bd56b1   gnu: r-desolve: Move to (gnu packages cran).
      adds  682768d   gnu: r-pracma: Move to (gnu packages cran).
      adds  ef7944b   gnu: r-subplex: Move to (gnu packages cran).
      adds  f3640e7   gnu: Remove obsolete import of R build system module.
      adds  dcc7fad   gnu: r-txtplot: Move to (gnu packages cran).
      adds  ff33752   gnu: Use the test-only Xorg variant for tests.
      adds  38ae96e   gnu: xorg-server: Update to 1.20.6.
      adds  6039211   gnu: notmuch: Update to 0.29.3.
      adds  7b5a120   gnu: xapian: Update to 1.4.14.
      adds  164d0ad   gnu: python-xapian-bindings: Sphinx is a native input.
      adds  546c9fa   gnu: bubblewrap: Update home page.
      adds  fd5ccec   gnu: bubblewrap: Update to 0.4.0.
      adds  e1695f4   gnu: whois: Update to 5.5.3.
      adds  ba5ef99   gnu: python-dbus: Update to 1.2.14.
      adds  9943d23   gnu: feh: Adapt tests for imlib2 1.6.
      adds  7297ebb   gnu: Blender: Update to 2.81.
      adds  3751555   gnu: tome4: Update to 1.6.4.
      adds  efec58e   gnu: r-factominer: Update to 2.0.
      adds  fda807d   gnu: r-writexl: Update to 1.2.
      adds  ad6ab1a   gnu: r-emmeans: Update to 1.4.3.
      adds  04c3fd8   gnu: r-rnifti: Update to 1.0.1.
      adds  e2448b4   gnu: r-grimport: Update to 0.9-3.
      adds  bb180e8   gnu: r-grimport2: Update to 0.2-0.
      adds  7dcd823   gnu: r-kohonen: Update to 3.0.10.
      adds  7b18e6d   gnu: r-covr: Update to 3.4.0.
      adds  28d9409   gnu: r-rgdal: Update to 1.4-8.
      adds  6fdf3d5   gnu: r-igraph: Update to
      adds  bf5b792   gnu: r-matrix: Update to 1.2-18.
      adds  ba54cb6   gnu: r-rmarkdown: Update to 1.18.
      adds  18a5575   gnu: r-e1071: Update to 1.7-3.
      adds  3e68e7d   gnu: gparted: Satisfy 'guix lint'.
      adds  3c52617   gnu: snorenotify: Update inputs.
      adds  4632e7c   gnu: avidemux: Clean up inputs.
      adds  e8c6644   lint: Check for more packages which should be native.
      adds  295c6a7   doc: Handle right arrows in 'syntax-highlighted-html'.
      adds  9e3f9ac   substitute: 'http-multiple-get' no longer drops requests 
above 1,000.
      adds  73765c9   services: nginx: Add description.
      adds  fa983b8   ui: Add 'file-hyperlink'.
      adds  055f052   ui: 'display-generation' emits a hyperlink for the 
      adds  c1c6650   services: Add pam-mount.
      adds  62e7864   doc: Link to Guile's SXML section.
      adds  f71b16e   gnu: r-emmeans: Update to
      adds  5af7378   gnu: sbcl-lack-middleware-backtrace: Provide a file-name.
      adds  3b1e29a   gnu: sbcl-lack-component: Provide a file-name.
      adds  c2db64c   gnu: sbcl-lack: Provide a file-name.
      adds  b61fcdc   gnu: sbcl-lack-util: Provide a file-name.
      adds  cfbd9b4   gnu: sbcl-lack-request: Provide a file-name.
      adds  d49eb36   gnu: sbcl-lack-middleware-static: Provide a file-name.
      adds  040a744   gnu: sbcl-chinga: Don't use unstable tarball.
      adds  a32e8b2   gnu: sbcl-parse-number: Don't use unstable tarball.
      adds  0089290   gnu: sbcl-parse-number: Update to 1.7.
      adds  a549802   gnu: mplayer: Adjust inputs.
      adds  ee9eafc   gnu: openclonk: Adjust for GCC 7.
      adds  6018d26   gnu: openclonk: Update description.
      adds  8eebde7   gnu: vte/gtk+-2: Adjust for changes in inherited package.
      adds  38a404d   gnu: python2-matplotlib: Do not inherit test adjustments.
      adds  c09f598   gnu: python-matplotlib: Do not move the 'check' phase.
      adds  77e7158   gnu: r-jpeg: Move to (gnu packages cran).
      adds  2d6bd5e   pull, describe: Emit hyperlinks for commit identifiers.
      adds  478880c   gnu: psm: Remove all timestamps.
      adds  d8f8adf   gnu: psm: Disable memory statistics code.
      adds  183fd20   gnu: googletest: Build with python3.
      adds  abf43a6   gnu: Move lisp libraries to lisp-xyz, uglify-js to 
javascript and stumpwm to wm.
      adds  076527c   Revert "gnu: Move lisp libraries to lisp-xyz, uglify-js 
to javascript and stumpwm to wm."
      adds  73dd065   gnu: retroarch: Use system miniupnpc.
      adds  e00d5b6   gnu: xinetd: Update to [fix build].
      adds  d79db39   gnu: iotop: Build with python3.
      adds  0202bdc   gnu: crda: Build without python.
      adds  a566231   gnu: python-invoke: Update to 1.3.0.
      adds  757e402   gnu: faba-icon-theme: Don't use unstable tarball.
      adds  8c3f217   gnu: moka-icon-theme: Don't use unstable tarball.
      adds  bbf66cb   gnu: arc-icon-theme: Don't use unstable tarball.
      adds  809b396   gnu: rclone: Update to 1.50.2.
      adds  f02fc04   gnu: xterm: Update to 351.
      adds  68ac34e   gnu: openmpi: Increase priority of the PSM component.
      adds  b6b014b   daemon: 'pathExists' uses 'statx' when available.
      adds  403604c   gnu: Add tdlib.
      adds  55e1dfa   ui: Factorize 'with-profile-lock'.
      adds  3f8e890   ui: 'with-profile-lock' keeps going upon ENOLCK.
      adds  dac7928   tests: Fix race condition in profile locking test.
      adds  23bb7a6   gnu: php: Update to 7.4.0.
      adds  c19df02   gnu: emacs-debbugs: Update to 0.21.
      adds  492bd71   gnu: emacs-rainbow-mode: Update to 1.0.2.
      adds  35258a9   gnu: limnoria: Update to 2019.11.22.
      adds  293fe0d   gnu: perl-email-sender: Update to 1.300033.
      adds  adccd75   gnu: nano: Update to 4.6.
      adds  aa56ca3   gnu: linux-libre@4.4: Update to 4.4.205.
      adds  45f8102   gnu: linux-libre@4.9: Update to 4.9.205.
      adds  a651323   gnu: linux-libre: Update to 5.3.14.
      adds  8146ec5   gnu: opam: Remove unneeded dependency on deprecated 
      adds  3a23b46   gnu: lablgtk: Update to 2.18.8.
      adds  a36074a   gnu: ocaml-findlib: Update to 1.8.1.
      adds  24b199f   gnu: ocaml-bitstring: Remove unneeded dependencies.
      adds  af76eed   gnu: ocaml-batteries: Remove unneeded dependencies.
      adds  e4070d4   gnu: ocaml-bisect: Remove package.
      adds  5696fbd   gnu: ocaml-csv: Update to 2.3.
      adds  5a4003f   gnu: Add ocaml-gen.
      adds  98a468f   gnu: Add ocaml-sedlex.
      adds  05fe0a5   gnu: ocaml-piqilib: Update to 0.6.15.
      adds  c7174a7   gnu: ocaml-ulex: Remove package.
      adds  c8b309e   gnu: ocaml-piqi: Update to 0.7.7.
      adds  c5fb14f   gnu: ocaml-camomile: Remove unneeded dependency.
      adds  166001f   gnu: camlp4: Remove obsolete package.
      adds  c60d98d   guix: import: Fix opam importer.
      adds  ba3ff73   guix: import: Fix importing dune project.
      adds  7754975   gnu: retroarch: Disable the on-line updater.
      adds  2d59495   gnu: perl-compress-raw-bzip2: Update to 2.091.
      adds  7b8ab1f   gnu: perl-compress-raw-zlib: Update to 2.091.
      adds  676cb25   gnu: perl-io-compress: Update to 2.091.
      adds  1230a07   gnu: perl-archive-extract: Update to 0.82.
      adds  4e5e3bb   gnu: perl-moose: Update to 2.2012.
      adds  aadd107   gnu: python-passlib: Update to 1.7.2.
      adds  ff3d1b9   gnu: python-pyclipper: Update to 1.1.0.post3.
      adds  43ae8f7   gnu: python-icalendar: Update to 4.0.4.
      adds  b577306   gnu: acpica: Update to 20191018.
      adds  2a6403c   gnu: accountsservice: Don't use NAME in source URI.
      adds  93f6165   gnu: arandr: Don't use NAME in source URI.
      adds  218c785   gnu: arandr: Update to 0.1.10.
      adds  69dc3e5   gnu: datefudge: Update to 1.23.
      adds  d70478d   gnu: lsof: Don't capture details about the build 
machine's kernel.
      adds  99c4587   gexp: 'local-file' properly resolves non-literal relative 
file names.
      adds  7f25ff1   services: Add polkit-wheel-service.
      adds  27b7722   services: Add polkit-wheel-service to %desktop-services.
      adds  11a0534   gnu: toot: Update to 0.24.0.
      adds  93a02ae   gnu: calcurse: Update to 4.5.1.
      adds  1de5265   gnu: nasm: Don't use NAME in source URI.
      adds  111f7c0   gnu: toybox: Update to 0.8.2.
      adds  d2119dd   gnu: f2fs-tools: Update to 1.13.0.
      adds  7e59d21   gnu: ncdu: Update to 1.14.1.
      adds  6a04c8f   gnu: dcmtk: Update to 3.6.5.
      adds  44b5a74   gnu: emacs-howm: Update to 1.4.5.
      adds  0a03c5e   gnu: emacs-howm: Use HTTPS source and home page.
      adds  c8de797   gnu: calf: Update to 0.90.3.
      adds  1ff64c5   gnu: nauty: Update to 2.6r12.
      adds  abe0825   gnu: paperkey: Update to 1.6.
      adds  9530c4b   gnu: paperkey: Use HTTPS source and home page.
      adds  c7164ad   gnu: fcgi: Update to 2.4.2.
      adds  dbef037   gnu: z3: Update to 4.8.7.
      adds  fe147c9   gnu: tnef: Update to 1.4.18.
      adds  2ea5b74   gnu: ncdc: Update to 1.22.1.
      adds  93882a9   gnu: gnu-efi: Update to 3.0.11.
      adds  a50d609   gnu: edgar: Update to 1.32.
      adds  988f53e   gnu: yapet: Update to 2.3.
      adds  4a62a29   gnu: arandr: Download over HTTPS.
      adds  50db7df   gnu: cbatticon: Update to 1.6.10.
      adds  4d441ca   gnu: thermald: Update to 1.9.
      adds  f5bfaf3   gnu: hostapd: Update to 2.9.
      adds  d67e753   gnu: stellarium: Update to 0.19.2.
      adds  cf2013d   gnu: nnn: Update to 2.7.
      adds  0b4ced5   gnu: pscircle: Update to 1.3.1.
      adds  280189d   gnu: perl-x11-protocol-other: Update to 31.
      adds  7366214   gnu: perl-xml-rss: Update to 1.61.
      adds  353fb48   gnu: guile-ffi-fftw: Update to 0-2.294ad9e.
      adds  7055c62   gnu: r-extremes: Update to 2.0-11.
      adds  2899a9d   gnu: r-vioplot: Update to 0.3.4.
      adds  670a010   gnu: r-sdmtools: Update to 1.1-221.2.
      adds  3e3fd3b   gnu: r-algdesign: Update to 1.2.0.
      adds  a346c93   gnu: r-insight: Update to 0.7.1.
      adds  5378a1a   gnu: r-rvcheck: Update to 0.1.7.
      adds  db1106e   gnu: r-catools: Update to
      adds  f71b0a0   ci: Make sure the Guix checkout is the one providing 
Cuirass proc.
      adds  d83bb79   gnu: Add resample.
      adds  27bcdfc   gnu: Add sobjectizer.
      adds  13d79b6   gnu: Add restinio.
      adds  4fe8a9f   gnu: opendht: Update to 2.0.0beta2.
      adds  5dc8cad   gnu: pjproject: Update to 2.9.
      adds  de65f3f   gnu: jami: Update to 20191101.3.67671e7.
      adds  fbcd60d   gnu: pjproject-jami: Update to 2.9
      adds  a83855f   gnu: libring: Update to 20191101.
      adds  5b02898   gnu: jami: Fix wrapper.
      adds  39c746f   gnu: bs1770gain: Update to 0.6.5.
      adds  d4ddf22   system: vm: Support cross-compilation.
      adds  fcc4c6a   scripts: system: Add --target option.
      adds  2c5dd47   tests: lzlib: Do not fail if lzlib in not available.
      adds  c6d1306   build: vm: Fix qemu-command procedure.
      adds  b6d852c   guix: Add the 'qt' build system.
      adds  2f57e34   gnu: sddm: Use qt-build-system.
      adds  7d796d8   gnu: ktouch: Use qt-build-system.
      adds  e185e90   gnu: kdeconnect: Use qt-build-system.
      adds  34e3161   gnu: quaternion: Use qt-build-system.
      adds  d7d23c8   gnu: asymptote: Update to 2.61.
      adds  faaffb9   gnu: fet: Update to 5.41.0.
      adds  363359f   gnu: grammalecte: Update to 1.6.0.
      adds  c114e35   gnu: giac: Update to 1.5.0-75.
      adds  b4cb5d7   gnu: WireGuard: Update to 0.0.20191127.
      adds  8ab624f   gnu: mame: Update to 0.216.
      adds  6610b04   gnu: snap: Update to 5.3.8.
      adds  6177b14   gnu: scummvm: Update to 2.1.0.
      adds  33d1c97   install: Pass 'local-file' literal strings for proper 
      adds  eac9ddf   gnu: linux-libre@4.14: Update to 4.14.157.
      adds  b3cea86   gnu: linux-libre@4.19: Update to 4.19.87.
      adds  ad54d6c   gnu: Add ipcalc.
      adds  5005b6a   gnu: ccls: Update to 0.20190823.5.
      adds  c4c59b0   gnu: Add emacs-shrink-path.
      adds  bdc11c0   gnu: Add emacs-doom-modeline.
      adds  f45968c   gnu: Add emacs-org-present.
      adds  6697771   gnu: Add q5go.
      adds  abad22d   gnu: gajim: Avoid top-level reference to 'python'.
      adds  a72aab9   gnu: stress-make: Avoid top-level reference to 'gnu-make'.
      adds  8804215   gnu: 0ad-data: Avoid top-level references to 
      adds  e1b88fd   gnu: android-libselinux: Avoid top-level references to 
      adds  c07c0ac   gnu: Add emacs-telega.
      adds  c2b2c8e   lint: archival: Gracefully handle network failures.
      adds  61b77ff   gnu: python-pillow: Replace check phase.
      adds  979d846   gnu: python-pillow: Make check phase conditional.
      adds  0c4e1c5   gnu: python-pillow: Sort inputs alphabetically.
      adds  5fbdd91   gnu: python-pillow: Update to 6.2.1.
      adds  ca7c365   gnu: python-scikit-image: Move to (gnu packages 
      adds  ec1224a   gnu: python-scipy: Move to (gnu packages python-science).
      adds  d97cdff   gnu: python-socksipychain: Update to 2.1.0.
      adds  8c655de   gnu: pagekite: Update to
      adds  13125c5   gnu: Remove python2-socksipychain.
      adds  b1d13e4   gnu: snd: Update to 19.9.
      adds  c93bd94   gnu: soundtouch: Use HTTPS home page.
      adds  fb0f4ab   gnu: xclock: Update to 1.0.9.
      adds  c6df2f5   gnu: xclock: Don't use NAME in source URI.
      adds  468c240   gnu: console-setup: Update to 1.194.
      adds  51058cb   gnu: eid-mw: Update to 4.4.23.
      adds  bc134c7   gnu: pugixml: Update to 1.10.
      adds  df76e05   gnu: nsd: Update to 4.2.3.
      adds  4e94744   gnu: less: Add upstream source URI.
      adds  6deab02   gnu: less: Update to 551.
      adds  b73a930   gnu: microcom: Use GIT-FILE-NAME.
      adds  d9a746d   gnu: microcom: Update to 2017.03.0.
      adds  fc1ca29   gnu: microcom: Use HTTPS home page.
      adds  a36eba4   gnu: mtr: Update to 0.93.
      adds  3f80d7c   gnu: mtr: Don't use NAME in source URI.
      adds  30954e6   gnu: mtr: Use @acronym{}.
      adds  378506a   gnu: sysstat: Update to 12.2.0.
      adds  d539ca1   gnu: exo: Update to 0.12.10.
      adds  8e93635   gnu: xlockmore: Update to 5.59.
      adds  0576681   gnu: emacs-diff-hl: Update to 1.8.7.
      adds  324db47   gnu: toot: Add missing input.
      adds  d507ec0   gnu: toot: Make propagated-inputs regular inputs.
      adds  dc7e578   gnu: jp2a: Downgrade to 1.0.6.
      adds  5635512   Revert "doc: Fix typo in example."
      adds  ea5af6e   gnu: r-curl: Update to 4.3.
      adds  bce0fca   gnu: r-dendextend: Update to 1.13.2.
      adds  a477a5c   gnu: r-network: Update to 1.16.0.
      adds  27c2a6a   gnu: r-maptools: Update to 0.9-9.
      adds  de5092b   gnu: r-bayesplot: Update to 1.7.1.
      adds  8aab9b9   gnu: r-sjplot: Update to 2.8.1.
      adds  6a7ac0a   gnu: r-rspectra: Update to 0.16-0.
      adds  3fff4de   gnu: r-testthat: Update to 2.3.1.
      adds  64d576e   gnu: r-roxygen2: Update to 7.0.2.
      adds  dfe11a4   gnu: r-rsqlite: Update to 2.1.3.
      adds  6b9ec7b   gnu: libburn: Update to 1.5.2.
      adds  a344a1a   gnu: libcdio-paranoia: Update to 10.2+2.0.0.
      adds  741b505   gnu: libcdio: Update to 2.1.0.
      adds  efa4529   gnu: girara: Update to 0.3.3.
      adds  1b6c5e8   gnu: cmocka: Update to 1.1.5.
      adds  4c16ffd   gnu: tcc: Add search paths and drop the wrapper.
      adds  32c06af Use a deterministic umask.
      adds  dc3e62a   gnu: handbrake: Upgrade to 1.3.0.
      adds  312ec12   gnu: python-pandas: Move to (gnu packages python-science).
      adds  17f88b9   gnu: emacs-doom-modeline: Update to 2.8.0.
      adds  362e5f9   gnu: emacs-elisp-demos: Update to 2019.12.01.
      adds  d6445fa   gnu: emacs-irony-mode: Update to 1.4.0.
      adds  19e67f8   gnu: emacs-olivetti: Update to 1.8.1.
      adds  6998ecb   gnu: r-bsgenome-celegans-ucsc-ce10: Use bioconductor-uri.
      adds  149f351   gnu: r-bsgenome-dmelanogaster-ucsc-dm6: Use 
      adds  87073b7   gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Use 
      adds  bf05ece   gnu: r-bsgenome-dmelanogaster-ucsc-dm3-masked: Use 
      adds  88e7c7d   gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Use 
      adds  a47646b   gnu: r-bsgenome-hsapiens-ucsc-hg19-masked: Use 
      adds  21f6dae   gnu: r-bsgenome-mmusculus-ucsc-mm9: Use bioconductor-uri.
      adds  51dc4a2   gnu: r-bsgenome-mmusculus-ucsc-mm9-masked: Use 
      adds  f83404b   gnu: r-bsgenome-mmusculus-ucsc-mm10: Use bioconductor-uri.
      adds  1c05e63   gnu: r-org-ce-eg-db: Use bioconductor-uri.
      adds  b0dfc79   gnu: r-org-dm-eg-db: Use bioconductor-uri.
      adds  7bb65a2   gnu: r-org-dr-eg-db: Use bioconductor-uri.
      adds  f53becc   gnu: r-org-hs-eg-db: Use bioconductor-uri.
      adds  411be88   gnu: r-org-mm-eg-db: Use bioconductor-uri.
      adds  e7a8cf2   gnu: r-bsgenome-hsapiens-ucsc-hg19: Use bioconductor-uri.
      adds  717d7cd   gnu: r-genelendatabase: Use bioconductor-uri.
      adds  f2580a1   gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Use 
      adds  d78db08   gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Use 
      adds  1afdf41   gnu: r-txdb-mmusculus-ucsc-mm9-knowngene: Use 
      adds  c271d99   gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Use 
      adds  6aca405   gnu: r-fdb-infiniummethylation-hg19: Use bioconductor-uri.
      adds  25f567a   gnu: r-illuminahumanmethylationepicmanifest: Use 
      adds  eed2766   gnu: r-do-db: Use bioconductor-uri.
      adds  ced61ed   gnu: r-abadata: Use bioconductor-uri.
      adds  b86f774   gnu: r-arrmdata: Use bioconductor-uri.
      adds  545e67a   gnu: r-hsmmsinglecell: Use bioconductor-uri.
      adds  41728d2   gnu: r-all: Use bioconductor-uri.
      adds  14ebd6f   gnu: r-survival: Update to 3.1-8.
      adds  e21b668   gnu: r-rversions: Update to 2.0.1.
      adds  bcda077   gnu: lablgtk: Use a source file-name.
      adds  0f4f571   gnu: p7zip: Move *asm inputs to native-inputs.
      adds  5045821   gnu: ocaml-gen: Don't use unstable tarball.
      adds  9e21a1c   gnu: hexchat: Fix up inputs.
      adds  6ea613c   gnu: r-catterplots: Update to 0-3.ae17cd5.
      adds  fabd490   build-system/linux-module: Accept a #:make-flags keyword.
      adds  65a7dd2   build: emacs-build-system: Unify the installation 
      adds  9aca5ce   gnu: emacs: Simplify the EMACSLOADPATH search path 
      adds  c320acd   gnu: emacs: Fix guix-emacs.el indentation.
      adds  903765f   gnu: emacs: Use load-path instead of EMACSLOADPATH.
      adds  7185a8d   gnu: emacs-ert-runner: Fix build.
      adds  4c503ed   gnu: emacs-emacsql: Fix build.
      adds  8f523eb   gnuL librsvg-next: Unvendor some rust crates.
      adds  269c827   gnu: emacs-transient: Refer to the updated installation 
      adds  34369f3   gnu: icecat: Update to 68.3.0-guix0-preview1 [security 
      adds  1a7633c   services: SSH services: Provide 'ssh' and 'sshd' Shepherd 
      adds  d944777   gnu: tmux: Update to 3.0a.
      adds  e71513f   gnu: MPD: Update to 0.21.16.
      adds  8548b3d   gnu: ncmpc: Update to 0.36.
      adds  a649217   substitute: Remove unused procedure.
      adds  fe7b59c   services: Add GNOME Keyring service.
      adds  d755404   gnu: bitlbee: Use Python 3.
      adds  114dcb4   ssh: Add 'authenticate-server*' and use it for offloading.
      adds  f5c1801   ssh: Always authenticate the server [security fix].
      adds  2b86828   ssh: 'open-ssh-session' can be passed the expected host 
      adds  ed15dfc   machine: ssh: <machine-ssh-configuration> can include the 
host key.
      adds  208e743   gnu: sunxi-tools: Simplify build.
      adds  936aa05   gnu: Remove duplicate nlohmann-json-cpp package.
      adds  17c26b7   build/cargo-build-system: Move generate-all-checksums to 
      adds  e80a447   gnu: gnuzilla: Use 'generate-all-checksums'.
      adds  e07b048   gnu: rust: Use 'generate-all-checksums'.
      adds  4585859   gnu: rust: Fix building.
      adds  7fe021b   gnu: vulkan-headers: Update to 1.1.119.
      adds  47406a9   gnu: mesa: Remove unnecessary inputs.
      adds  23cbc6b   gnu: libinput: Update to 1.14.0.
      adds  3e93b2b   gnu: qt: Update to 5.12.4.
      adds  65ff644   gnu: libvdpau: Update to 1.3.
      adds  5ceb1a3   gnu: wayland-protocols: Update to 1.18.
      adds  d111ae4   gnu: mesa: Update to 19.1.5.
      adds  e01d384   gnu: vulkan-headers: Update to 1.1.121.
      adds  d1f3b33   Merge branch 'master' into staging
      adds  ad57da2   gnu: libwebp: Remove obsolete phase.
      adds  a5cd5c9   gnu: tzdata: Update to 2019c.
      adds  c021c43   gnu: libfaketime: Update to 0.9.8.
      adds  a40416f   gnu: imagemagick: Update to 6.9.10-68.
      adds  c29bdd5   gnu: nspr: Update to 4.22.
      adds  d45c75f   gnu: nss, nss-certs: Update to 3.46.1.
      adds  72fbea3   gnu: bluez: Update to 5.51.
      adds  9205f45   gnu: lz4: Update to 1.9.2.
      adds  3572b39   gnu: libogg: Update to 1.3.4.
      adds  080edbe   gnu: gdk-pixbuf: Update to 2.40.0.
      adds  605b7f4   gnu: gtk+: Update to 3.24.12.
      adds  18b804c   gnu: libinput: Update to 1.14.1.
      adds  cb15ad7   gnu: libgit2: Update to 0.28.3.
      adds  969aea1   gnu: libical: Update to 3.0.6.
      adds  a4384dc   gnu: OpenBLAS: Incorporate grafted changes.
      adds  2ea0953   gnu: OpenBLAS: Update to 0.3.7.
      adds  1ea8b3b   gnu: electron-cash: Update to 4.0.10.
      adds  1c10ba3   gnu: python-packaging: Update to 19.2.
      adds  f855616   gnu: qpdf: Update to 9.0.1.
      adds  1e429a8   gnu: cups-filters: Update to 1.25.7.
      adds  5ba3ea4   gnu: CUPS: Update to 2.3.0.
      adds  4442d4d   gnu: pulseaudio: Update to 13.0.
      adds  45b01f2   gnu: orc: Update to 0.4.30.
      adds  d1b8ef9   gnu: gstreamer: Update to 1.16.1.
      adds  52b61e9   gnu: gtk+: Add libxrandr input.
      adds  2b8491f   gnu: mariadb: Split into out, lib and dev.
      adds  4a38ec9   gnu: Remove GDB@8.2.
      adds  178611c   gnu: mesa: Update to 19.2.1.
      adds  e3fa098   gnu: libXfont: Update to 2.0.4.
      adds  c4220af   gnu: libXvMC: Update to 1.0.12.
      adds  d87f681   gnu: python-sphinx: Update to 2.2.0.
      adds  8df9249   gnu: qt: Update to 5.12.5.
      adds  d967fbc   gnu: ant-build-system: Don't override symlinks.
      adds  44bac44   gnu: java-javaee-servletapi: Don't use unstable tarball.
      adds  8ea8d60   gnu: java-javaee-servletapi: Add properties-files to jar.
      adds  53ba191   gnu: Remove dependencies on java-tomcat, use servlet API 
      adds  b503ae3   gnu: java-commons-daemon: Update to 1.1.0.
      adds  bc3497a   gnu: Add java-ecj in version 4.6.3.
      adds  3977512   gnu: java-tomcat: Build the full Tomcat package.
      adds  d99e7ee   gnu: java-tomcat: Update to 8.5.46.
      adds  378ebc0   Merge branch 'master' into staging
      adds  8fc24f3   gnu: OpenSSL@1.0: Incorporate grafted changes.
      adds  52efb4a   gnu: cups-filters: Update to 1.25.11.
      adds  531b63e   gnu: pulseaudio: Add optional X11 inputs.
      adds  2737c7f   gnu: mesa: Fix test failure on 32-bit systems.
      adds  c436261   gnu: sdl2: Fix build on 32-bit architectures.
      adds  a1d1703   gnu: orc: Fix broken header file.
      adds  b95d1b3   Merge branch 'master' into staging
      adds  a5ef1bc   gnu: looking-glass-client: Adjust for Mesa 19.2.
      adds  47dda6e   gnu: rust: Use GDB 8.2 for tests.
      adds  133be09   gnu: rust@1.27: Add comment about GDB requirement.
      adds  07abc85   gnu: kwindowsystem: Fix test failure with Qt 5.12.
      adds  023522d   Merge branch 'master' into staging
      adds  e806297   gnu: python-pyqt: Fix runtime error.
      adds  4c1918d   Merge branch 'master' into staging
      adds  a557810   Merge branch 'master' into staging
      adds  998e6cd   Merge branch 'master' into staging
      adds  ea57bb8   gnu: grantlee: Fix build for Qt 5.12.
      adds  8bfd7c8   gnu: qtwebkit: Use sqlite-with-column-metadata.
      adds  4f8071f   gnu: phonon: Update to 4.11.1.
      adds  a1cbeb7   gnu: phonon-backend-gstreamer: Update to 4.10.0.
      adds  1dd1076   gnu: kde-frameworks: Update to 5.63.0.
      adds  862862e   gnu: Add kcalendarcore.
      adds  ebd00f3   gnu: Add kcontacts.
      adds  12c6554   gnu: Add syndication.
      adds  eddad10   gnu: kde plasma: Update to 5.17.0.
      adds  869184a   gnu: libkomparediff2: Update to 19.08.2.
      adds  6da8785   gnu: kqtquickcharts: Update to 19.08.2.
      adds  6d8bffd   gnu: krita: Update to
      adds  77f144d   gnu: ktouch: Update to 19.08.2.
      adds  15cd706   gnu: Move kpmcore to kde.scm.
      adds  38988db   gnu: kpmcore: Update to 4.0.1.
      adds  5efd0b2   gnu: Remove reference to removed patch.
      adds  2c9d341   gnu: libreoffice: Use the "dev" output of MariaDB.
      adds  f056553   Merge branch 'master' into staging
      adds  9c88149   gnu: kpmcore: Fix dependencies.
      adds  62b8ae1   gnu: astyle: Create symlinks for .so files, too.
      adds  0c6ab52   gnu: astyle: Install header file, too.
      adds  b60d2bf   Merge branch 'master' into staging
      adds  a59e2dd   gnu: qtbase: Use absolute references in .prl files.
      adds  f0de36c   gnu: qtbase: Restore compatibility with old kernels.
      adds  6d460e8   gnu: Qt: Update to 5.12.6 LTS.
      adds  0897ad7   Merge branch 'master' into staging
      adds  34f849a   Merge branch 'master' into staging
      adds  cff1e09   gnu: java: Remove precompiled classes.
      adds  d733a46   gnu: Remove dependency on Python 2 for some Qt packages.
      adds  33b59c1   Merge branch 'staging'
      adds  63e8df3   gnu: feh: Update to 3.3.
      adds  66c15f7   gnu: ffmpeg: Update to 3.4.7.
      adds  1cd9149   gnu: notmuch: Fix build.
      adds  c63d472   gnu: knot: Update to 2.9.1 [fixes CVE-2019-19331].
      adds  e18aeb4   gnu: emacs-scel: Fix build.
      adds  6b84a31   gnu: emacs-org-contrib: Fix build.
      adds  f3d4015   gnu: girara: Fetch sources from git.
      adds  8f15c1c   gnu: mpop: Update to 1.4.6.
      adds  29a87ed   gnu: imapfilter: Update to 2.6.16.
      adds  ce63a3b   gnu: libgig: Update to 4.2.0.
      adds  4fe7adc   gnu: pd: Update to 0.50-2.
      adds  0fa9f29   gnu: libjpeg-turbo: Fix CVE-2019-13960 and CVE-2019-2201.
      adds  29e621a   gnu: Remove unused module import.
      adds  ac1ee30   gnu: Properly move lisp libraries to lisp-xyz, uglify-js 
to javascript and stumpwm to wm.
      adds  73bd8ab   Revert "build-system/linux-module: Accept a #:make-flags 
      adds  b665a24   gnu: librsvg-next: Use generate-all-checksums.
      adds  d9544d9   Revert "gnu: Properly move lisp libraries to lisp-xyz, 
uglify-js to javascript and stumpwm to wm."
      adds  252f44f   gnu: procenv: Update to 0.51.
      adds  ba362ec   gnu: libimagequant: Update to 2.12.5.
      adds  88f06fd   gnu: Really move lisp libraries to lisp-xyz, uglify-js to 
javascript and stumpwm to wm.
      adds  34bf686   gnu: Add python-pykwalify.
      adds  2c2fc24   gnu: Add west.
      adds  2eec86e   gnu: linux-libre@4.4: Update to 4.4.206.
      adds  5ecee81   gnu: linux-libre@4.9: Update to 4.9.206.
      adds  1c90bc7   gnu: linux-libre@4.14: Update to 4.14.158.
      adds  4dcd63d   gnu: linux-libre@4.19: Update to 4.19.88.
      adds  d4d7bf6   gnu: linux-libre: Update to 5.3.15.
       new  2a12e9c   Merge branch 'master' into wip-gnome-updates

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.

Summary of changes:
 .dir-locals.el                                     |    1 +                                        |    2 +
 build-aux/hydra/gnu-system.scm                     |   36 +-
 doc/build.scm                                      |    1 +
 doc/guix.texi                                      |  174 +-
 etc/                                |    1 +
 gnu/build/vm.scm                                   |    7 +-
 gnu/ci.scm                                         |   22 +-
 gnu/                                       |   25 +-
 gnu/machine/ssh.scm                                |    9 +-
 gnu/packages/admin.scm                             |  126 +-
 gnu/packages/algebra.scm                           |    4 +-
 gnu/packages/android.scm                           |   11 +-
 gnu/packages/assembly.scm                          |    2 +-
 gnu/packages/astronomy.scm                         |    4 +-
 gnu/packages/audio.scm                             |   50 +-
 gnu/packages/aux-files/emacs/guix-emacs.el         |    9 +-
 gnu/packages/base.scm                              |   26 +-
 gnu/packages/benchmark.scm                         |    1 +
 gnu/packages/bioconductor.scm                      |  221 +-
 gnu/packages/bioinformatics.scm                    |    6 +-
 gnu/packages/busybox.scm                           |    4 +-
 gnu/packages/c.scm                                 |   68 +-
 gnu/packages/calcurse.scm                          |    4 +-
 gnu/packages/calendar.scm                          |    4 +-
 gnu/packages/cdrom.scm                             |   14 +-
 gnu/packages/certs.scm                             |    4 +-
 gnu/packages/check.scm                             |   10 +-
 gnu/packages/code.scm                              |   32 +-
 gnu/packages/compression.scm                       |   11 +-
 gnu/packages/cpp.scm                               |   39 +-
 gnu/packages/cran.scm                              |  229 +-
 gnu/packages/cups.scm                              |   13 +-
 gnu/packages/databases.scm                         |   58 +-
 gnu/packages/dc.scm                                |    6 +-
 gnu/packages/debug.scm                             |    2 +-
 gnu/packages/dictionaries.scm                      |    4 +-
 gnu/packages/disk.scm                              |    6 +-
 gnu/packages/display-managers.scm                  |   18 +-
 gnu/packages/dns.scm                               |    9 +-
 gnu/packages/education.scm                         |   31 +-
 gnu/packages/efi.scm                               |   10 +-
 gnu/packages/emacs-xyz.scm                         |  198 +-
 gnu/packages/emacs.scm                             |    8 +-
 gnu/packages/embedded.scm                          |   32 +-
 gnu/packages/emulators.scm                         |   34 +-
 gnu/packages/engineering.scm                       |    6 +-
 gnu/packages/finance.scm                           |    9 +-
 gnu/packages/freedesktop.scm                       |   22 +-
 gnu/packages/games.scm                             |  115 +-
 gnu/packages/gdb.scm                               |   30 +-
 gnu/packages/gl.scm                                |   13 +-
 gnu/packages/glib.scm                              |   29 +
 gnu/packages/gnome.scm                             |  290 +-
 gnu/packages/gnupg.scm                             |   10 +-
 gnu/packages/gnuzilla.scm                          |   38 +-
 gnu/packages/graph.scm                             |    5 +-
 gnu/packages/graphics.scm                          |   14 +-
 gnu/packages/gstreamer.scm                         |   41 +-
 gnu/packages/gtk.scm                               |   43 +-
 gnu/packages/guile-xyz.scm                         |   10 +-
 gnu/packages/image-processing.scm                  |    6 +-
 gnu/packages/image-viewers.scm                     |    5 +-
 gnu/packages/image.scm                             |   81 +-
 gnu/packages/imagemagick.scm                       |    4 +-
 gnu/packages/irc.scm                               |    4 +-
 gnu/packages/java.scm                              |   97 +-
 gnu/packages/javascript.scm                        |   48 +
 gnu/packages/jupyter.scm                           |    3 +-
 gnu/packages/kde-frameworks.scm                    |  557 +-
 gnu/packages/kde-plasma.scm                        |   18 +-
 gnu/packages/kde.scm                               |  107 +-
 gnu/packages/kodi.scm                              |    3 +-
 gnu/packages/less.scm                              |   16 +-
 gnu/packages/libreoffice.scm                       |    2 +-
 gnu/packages/linux.scm                             |   51 +-
 gnu/packages/{lisp.scm => lisp-xyz.scm}            |  944 +--
 gnu/packages/lisp.scm                              | 7384 +-------------------
 gnu/packages/lsof.scm                              |    9 +-
 gnu/packages/machine-learning.scm                  |    3 +-
 gnu/packages/mail.scm                              |   35 +-
 gnu/packages/mastodon.scm                          |   18 +-
 gnu/packages/maths.scm                             |  130 +-
 gnu/packages/maven.scm                             |    5 +-
 gnu/packages/messaging.scm                         |   82 +-
 gnu/packages/microcom.scm                          |   12 +-
 gnu/packages/mpd.scm                               |    8 +-
 gnu/packages/mpi.scm                               |    2 +-
 gnu/packages/music.scm                             |   18 +-
 gnu/packages/nano.scm                              |    4 +-
 gnu/packages/ncdu.scm                              |    4 +-
 gnu/packages/networking.scm                        |  165 +-
 gnu/packages/nss.scm                               |   10 +-
 gnu/packages/ocaml.scm                             |  299 +-
 gnu/packages/parallel.scm                          |    1 +
 gnu/packages/password-utils.scm                    |   23 +-
 gnu/packages/patches/fcgi-2.4.0-gcc44-fixes.patch  |   14 -
 gnu/packages/patches/fcgi-2.4.0-poll.patch         |   89 -
 .../patches/gstreamer-buffer-reset-offset.patch    |   59 -
 gnu/packages/patches/handbrake-opt-in-nvenc.patch  |   14 -
 gnu/packages/patches/icecat-gnuzilla-fixes.patch   |  546 --
 gnu/packages/patches/icecat-makeicecat.patch       |   10 +-
 .../patches/kinit-kdeinit-extra_libs.patch         |    4 +-
 gnu/packages/patches/kpmcore-fix-tests.patch       |   30 +
 .../patches/kpmcore-remove-broken-test.patch       |  139 +
 .../patches/libjpeg-turbo-CVE-2019-2201.patch      |   31 +
 .../patches/mesa-timespec-test-32bit.patch         |   17 +
 .../patches/ocaml-piqilib-Update-base64.patch      |   46 -
 ...priority.patch => openmpi-mtl-priorities.patch} |   14 +
 gnu/packages/patches/orc-typedef-enum.patch        |   17 +
 .../patches/psm-disable-memory-stats.patch         |   62 +
 gnu/packages/patches/psm-repro.patch               |   42 +-
 .../patches/pugixml-versioned-libdir.patch         |   61 -
 gnu/packages/patches/pyqt-unbundled-qt.patch       |   19 +
 gnu/packages/patches/qtbase-old-kernel.patch       |   25 -
 .../patches/retroarch-disable-online-updater.patch |   41 +
 gnu/packages/patches/sdl2-mesa-compat.patch        |   21 +
 .../patches/thermald-make-int-max32-visible.patch  |   24 -
 gnu/packages/patches/xinetd-CVE-2013-4342.patch    |   36 -
 gnu/packages/patches/xinetd-fix-fd-leak.patch      |   26 -
 gnu/packages/pdf.scm                               |    4 +-
 gnu/packages/perl-compression.scm                  |   17 +-
 gnu/packages/perl.scm                              |    4 +-
 gnu/packages/php.scm                               |   91 +-
 gnu/packages/plotutils.scm                         |    4 +-
 gnu/packages/pulseaudio.scm                        |   19 +-
 gnu/packages/python-crypto.scm                     |    8 +-
 gnu/packages/python-science.scm                    |  287 +
 gnu/packages/python-xyz.scm                        |  370 +-
 gnu/packages/qt.scm                                |  179 +-
 gnu/packages/ruby.scm                              |    3 +-
 gnu/packages/rust.scm                              |   33 +-
 gnu/packages/sdl.scm                               |    1 +
 gnu/packages/search.scm                            |    9 +-
 gnu/packages/security-token.scm                    |    4 +-
 gnu/packages/serialization.scm                     |   36 +-
 gnu/packages/sphinx.scm                            |    4 +-
 gnu/packages/statistics.scm                        |   67 +-
 gnu/packages/sync.scm                              |    5 +-
 gnu/packages/telephony.scm                         |   87 +-
 gnu/packages/time.scm                              |    4 +-
 gnu/packages/tls.scm                               |   28 +-
 gnu/packages/tmux.scm                              |    4 +-
 gnu/packages/version-control.scm                   |    4 +-
 gnu/packages/video.scm                             |   79 +-
 gnu/packages/vim.scm                               |    2 +-
 gnu/packages/virtualization.scm                    |   19 +-
 gnu/packages/vpn.scm                               |    4 +-
 gnu/packages/vulkan.scm                            |   30 +-
 gnu/packages/web-browsers.scm                      |    1 +
 gnu/packages/web.scm                               |   96 +-
 gnu/packages/wm.scm                                |  121 +
 gnu/packages/xdisorg.scm                           |   12 +-
 gnu/packages/xfce.scm                              |    4 +-
 gnu/packages/xiph.scm                              |    4 +-
 gnu/packages/xml.scm                               |   12 +-
 gnu/packages/xorg.scm                              |   42 +-
 gnu/services/desktop.scm                           |   77 +
 gnu/services/pam-mount.scm                         |  111 +
 gnu/services/ssh.scm                               |    6 +-
 gnu/services/web.scm                               |    4 +-
 gnu/system.scm                                     |   15 +-
 gnu/system/install.scm                             |   11 +-
 gnu/system/vm.scm                                  |   18 +-
 guix/build-system/minify.scm                       |    4 +-
 guix/build-system/{cmake.scm => qt.scm}            |   63 +-
 guix/build/ant-build-system.scm                    |   15 +-
 guix/build/cargo-build-system.scm                  |   15 -
 guix/build/cargo-utils.scm                         |   16 +-
 guix/build/emacs-build-system.scm                  |   39 +-
 guix/build/qt-build-system.scm                     |  109 +
 guix/build/syscalls.scm                            |    4 +-
 guix/gexp.scm                                      |    7 +
 guix/import/opam.scm                               |   16 +-
 guix/lint.scm                                      |    6 +-
 guix/scripts/offload.scm                           |   30 +-
 guix/scripts/package.scm                           |    6 +-
 guix/scripts/pull.scm                              |   73 +-
 guix/scripts/substitute.scm                        |   42 +-
 guix/scripts/system.scm                            |   15 +-
 guix/ssh.scm                                       |   69 +-
 guix/ui.scm                                        |   68 +-
 nix/libutil/                                |    5 +
 tests/gexp.scm                                     |    8 +
 tests/                              |    4 +-
 tests/lzlib.scm                                    |    2 +-
 186 files changed, 4621 insertions(+), 11741 deletions(-)
 copy gnu/packages/{lisp.scm => lisp-xyz.scm} (86%)
 delete mode 100644 gnu/packages/patches/fcgi-2.4.0-gcc44-fixes.patch
 delete mode 100644 gnu/packages/patches/fcgi-2.4.0-poll.patch
 delete mode 100644 gnu/packages/patches/gstreamer-buffer-reset-offset.patch
 delete mode 100644 gnu/packages/patches/handbrake-opt-in-nvenc.patch
 delete mode 100644 gnu/packages/patches/icecat-gnuzilla-fixes.patch
 create mode 100644 gnu/packages/patches/kpmcore-fix-tests.patch
 create mode 100644 gnu/packages/patches/kpmcore-remove-broken-test.patch
 create mode 100644 gnu/packages/patches/libjpeg-turbo-CVE-2019-2201.patch
 create mode 100644 gnu/packages/patches/mesa-timespec-test-32bit.patch
 delete mode 100644 gnu/packages/patches/ocaml-piqilib-Update-base64.patch
 rename gnu/packages/patches/{openmpi-psm2-priority.patch => 
openmpi-mtl-priorities.patch} (59%)
 create mode 100644 gnu/packages/patches/orc-typedef-enum.patch
 create mode 100644 gnu/packages/patches/psm-disable-memory-stats.patch
 delete mode 100644 gnu/packages/patches/pugixml-versioned-libdir.patch
 create mode 100644 gnu/packages/patches/pyqt-unbundled-qt.patch
 delete mode 100644 gnu/packages/patches/qtbase-old-kernel.patch
 create mode 100644 gnu/packages/patches/retroarch-disable-online-updater.patch
 create mode 100644 gnu/packages/patches/sdl2-mesa-compat.patch
 delete mode 100644 gnu/packages/patches/thermald-make-int-max32-visible.patch
 delete mode 100644 gnu/packages/patches/xinetd-CVE-2013-4342.patch
 delete mode 100644 gnu/packages/patches/xinetd-fix-fd-leak.patch
 create mode 100644 gnu/packages/python-science.scm
 create mode 100644 gnu/services/pam-mount.scm
 copy guix/build-system/{cmake.scm => qt.scm} (85%)
 create mode 100644 guix/build/qt-build-system.scm

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