[Top][All Lists]

[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

33/47: gnu: Add r-ace2fastq.

From: guix-commits
Subject: 33/47: gnu: Add r-ace2fastq.
Date: Fri, 13 Dec 2019 16:42:20 -0500 (EST)

rekado pushed a commit to branch master
in repository guix.

commit b441dac7af3f6fbf8b0a7def117abc0181b52f33
Author: Ricardo Wurmus <address@hidden>
Date:   Fri Dec 13 18:51:11 2019 +0100

    gnu: Add r-ace2fastq.
    * gnu/packages/cran.scm (r-ace2fastq): New variable.
 gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 5c530a6..4b4d199 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -16860,3 +16860,29 @@ Functions for performing cross validation are also 
supplied along with basic
 prediction and plotting functions.  @dfn{Sparse zero variance
 discriminant} (SZVD) analysis is also included in the package.")
     (license license:gpl2+)))
+(define-public r-ace2fastq
+  (package
+    (name "r-ace2fastq")
+    (version "0.6.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "ace2fastq" version))
+       (sha256
+        (base32
+         "09kk3yyqnr2xp820g0p3aai9a21figigjr9lxkr3zjq2d8gzwfic"))))
+    (properties `((upstream-name . "ace2fastq")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-stringr" ,r-stringr)))
+    (home-page "";)
+    (synopsis "ACE file to FASTQ converter")
+    (description
+     "The ACE file format is used in genomics to store contigs from sequencing
+machines.  This tools converts it into FASTQ format.  Both formats contain the
+sequence characters and their corresponding quality information.  Unlike the
+FASTQ file, the ACE file stores the quality values numerically.  The
+conversion algorithm uses the standard Sanger formula.  The package
+facilitates insertion into pipelines, and content inspection.")
+    (license license:gpl3)))

reply via email to

[Prev in Thread] Current Thread [Next in Thread]