13/16: gnu: Add r-biocpkgtools.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 4a18112dfb738c325f9ef0145e9480df642ec9b8
Author: Ricardo Wurmus <address@hidden>
Date:   Wed Dec 18 15:25:31 2019 +0100

    gnu: Add r-biocpkgtools.
    
    * gnu/packages/bioconductor.scm (r-biocpkgtools): New variable.
---
 gnu/packages/bioconductor.scm | 44 +++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 44 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 62ec803..c5ad292 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -7274,3 +7274,47 @@ similarities can be calculated for pathways or gene 
sets, genes, or clusters
 and combined with other similarities.  They can be used to improve networks,
 gene selection, testing relationships, and so on.")
     (license license:expat)))
+
+(define-public r-biocpkgtools
+  (package
+    (name "r-biocpkgtools")
+    (version "1.4.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "BiocPkgTools" version))
+       (sha256
+        (base32
+         "0gyhb3071pxmvaxla7cxy9k97s3z3ynl62jnqz9jnkd53c7jnd53"))))
+    (properties `((upstream-name . "BiocPkgTools")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-biocmanager" ,r-biocmanager)
+       ("r-biocviews" ,r-biocviews)
+       ("r-dplyr" ,r-dplyr)
+       ("r-dt" ,r-dt)
+       ("r-gh" ,r-gh)
+       ("r-graph" ,r-graph)
+       ("r-htmltools" ,r-htmltools)
+       ("r-htmlwidgets" ,r-htmlwidgets)
+       ("r-httr" ,r-httr)
+       ("r-igraph" ,r-igraph)
+       ("r-jsonlite" ,r-jsonlite)
+       ("r-magrittr" ,r-magrittr)
+       ("r-rbgl" ,r-rbgl)
+       ("r-readr" ,r-readr)
+       ("r-rex" ,r-rex)
+       ("r-rvest" ,r-rvest)
+       ("r-stringr" ,r-stringr)
+       ("r-tibble" ,r-tibble)
+       ("r-tidyr" ,r-tidyr)
+       ("r-xml2" ,r-xml2)))
+    (home-page "https://github.com/seandavi/BiocPkgTools";)
+    (synopsis "Collection of tools for learning about Bioconductor packages")
+    (description
+     "Bioconductor has a rich ecosystem of metadata around packages, usage,
+and build status.  This package is a simple collection of functions to access
+that metadata from R.  The goal is to expose metadata for data mining and
+value-added functionality such as package searching, text mining, and
+analytics on packages.")
+    (license license:expat)))