branch staging updated (333d157 -> 0895002)

[guix-commits]

mbakke pushed a change to branch staging
in repository guix.

    from 333d157  gnu: kde-systemtools.scm: Adjust module imports.
     add 753c9b7  gnu: emacs-modus-themes: Update to 0.4.0.
     add 406c7bc  gnu: emacs-org: Update to 9.3.2.
     add 2e4ea24  gnu: emacs-org-contrib: Update to 20200126.
     add 4144eb1  gnu: sicp: Remove unused module import.
     add 1ef71f5  gnu: pcsxr: Wrap with GSETTINGS_SCHEMA_DIR path variable.
     add 7a4780c  gnu: ocambuild: Update to 0.14.0.
     add 73c26d5  gnu: Add ocaml4.07-lablgtk.
     add 0ccd946  gnu: Add ocaml4.07-dune.
     add 1e8da4c  guix: ocaml: Also replace dune when relevant in 
package-with-explicit-ocaml.
     add 87858bc  gnu: ocaml: Switch to ocaml 4.09 by default.
     add 47ea2ad  gnu: s6: Install documentation.
     add 71ffa52  gnu: keepassxc: Update to 2.5.3.
     add 4a0e492  gnu: public-inbox: Enable support for background HTTP/NNTP 
daemons.
     add 1f7f16d  gnu: emacs-org-make-toc: Update to 0.4.
     add 5e61de2  gnu: python-testpath: Remove incorrect #:imported-modules.
     add fd6412c  gnu: r-metap: Update to 1.3.
     add c6b4b4e  gnu: r-diversitree: Update to 0.9-13.
     add f0eecc6  gnu: r-callr: Update to 3.4.1.
     add 6e27edd  gnu: r-rgooglemaps: Update to 1.4.5.2.
     add 0be1617  gnu: r-prettyunits: Update to 1.1.1.
     add fde9fc4  gnu: r-lpsolve: Update to 5.6.15.
     add e5b38da  gnu: r-broom: Update to 0.5.4.
     add 485b9ce  gnu: r-xts: Update to 0.12-0.
     add 8a8e296  gnu: r-tsp: Update to 1.1-8.
     add c23b403  gnu: r-vctrs: Update to 0.2.2.
     add addf7bc  gnu: r-leaps: Update to 3.1.
     add 8958b37  gnu: r-factominer: Update to 2.1.
     add a82e617  gnu: r-sjlabelled: Update to 1.1.2.
     add a6494403 gnu: r-magick: Update to 2.3.
     add 6cdd125  gnu: r-survey: Update to 3.37.
     add 3575a16  gnu: r-sjstats: Update to 0.17.8.
     add 5c61d3e  gnu: r-bayestestr: Update to 0.5.1.
     add d56026a  gnu: r-performance: Update to 0.4.3.
     add a4bc993  gnu: r-effectsize: Update to 0.1.1.
     add 4a7e857  gnu: r-sjplot: Update to 2.8.2.
     add 5b95941  gnu: r-gh: Update to 1.1.0.
     add e99caf8  gnu: r-afex: Update to 0.26-0.
     add 6378827  gnu: r-gmp: Update to 0.5-13.6.
     add 6c6d051  gnu: r-rmpfr: Update to 0.8-1.
     add 9073c46  gnu: r-future: Update to 1.16.0.
     add 88bdfd7  gnu: r-dorng: Update to 1.8.2.
     add 107c14b  gnu: r-cobs: Update to 1.3-4.
     add 105639c  gnu: r-adegenet: Update to 2.1.2.
     add 93e6356  gnu: r-farver: Update to 2.0.3.
     add d3f58ab  gnu: r-threejs: Update to 0.3.3.
     add 7250861  gnu: r-rhpcblasctl: Update to 0.20-17.
     add 394fb5f  gnu: r-leiden: Update to 0.3.2.
     add 5cda9ff  gnu: r-parameters: Update to 0.4.1.
     add 328b5dd  gnu: r-bio3d: Update to 2.4-1.
     add 05e2ed8  gnu: r-rngwell: Update to 0.10-6.
     add ba6d9fd  gnu: r-idpmisc: Update to 1.1.20.
     add 7dd0af2  gnu: r-shinycssloaders: Update to 0.3.
     add 6748b6b  gnu: r-foreign: Update to 0.8-75.
     add 545ebaf  gnu: r-knitr: Update to 1.27.
     add c6d1b5d  gnu: r-rlang: Update to 0.4.3.
     add 564c333  gnu: r-rcpparmadillo: Update to 0.9.800.4.0.
     add 8d9e852  gnu: r-catools: Update to 1.18.0.
     add af837b9  gnu: r-rmarkdown: Update to 2.1.
     add 1cc17e3  gnu: r-blob: Update to 1.2.1.
     add b4a374e  gnu: r-xml: Update to 3.99-0.3.
     add 0d3d193  gnu: r-pkgmaker: Update to 0.31.
     add 68146b9  gnu: r-rngtools: Update to 1.5.
     add 1003fd5  gnu: r-tidyr: Update to 1.0.2.
     add 2c676da  gnu: r-rrcov: Update to 1.5-2.
     add 2afae7f  gnu: r-fpc: Update to 2.2-4.
     add a13db7e  build: cargo-build-system: Allow patched crates.
     add 0173e69  gnu: rust-libgit2-sys-0.10: Remove vendored code.
     add e230295  gnu: rust-jemalloc-sys-0.3: Remove vendored code.
     add ad03f50  gnu: rust-libssh2-sys-0.2: Remove vendored code.
     add bba73d4  gnu: rust-lzma-sys-0.1: Remove vendored code.
     add d6dde77  gnu: rust-libz-sys-1.0: Remove vendored code.
     add d0c4d1a  gnu: rust-pcre2-sys-0.2: Delete vendored code.
     add 61b95c1  build: cargo-build-system: Add pkg-config environment 
variables.
     add fcb510c  gnu: light: Install udev rules to allow sudo-less invocations.
     add 11f46dc  gnu: emacs-gif-screencast: Update to 1.1.
     add 3c63321  gnu: linux-libre@4.14: Update to 4.14.168.
     add 678f651  gnu: linux-libre@4.19: Update to 4.19.99.
     add 062cbc4  gnu: r-destiny: Update to 3.0.1.
     add c5d75df  gnu: r-ropls: Update to 1.18.8.
     add 0dfaebf  gnu: r-multiassayexperiment: Update to 1.12.2.
     add caf4290  gnu: r-s4vectors: Update to 0.24.3.
     add c7b98a8  gnu: r-genomicfeatures: Update to 1.38.1.
     add 94600c3  gnu: r-gviz: Update to 1.30.1.
     add 4fc4e5f  gnu: gnome: Remove gnome-initial-setup.
     add a38bf7c  gnu: Add r-deconstructsigs.
     add 150c38c  gnu: sicp: Do not import module from the host Guile.
     add cd903b0  git-authenticate: Add roptat's new key.
     add 2d3a622  gnu: guile-charting: Add "guile3.0-charting" variant.
     add 5d703da  gnu: Add libaudec.
     add 93f4511  gnu: Add zrythm.
     add 412622a  gnu: go-github-com-prometheus-node-exporter: Update to 0.18.1.
     add e53829b  gnu: termite: Open links properly without xdg-utils in profile
     add 7ee8acb  gnu: Add bvi.
     add a947ade  gnu: Add vim-guix-vim.
     add 26d361b  gnu: Add emacs-company-ebdb.
     add a3cad59  gnu: emacs-xyz: Update copyright header.
     add d5a0820  gnu: manuskript: Update to 0.11.0.
     add 2545ab2  gnu: gourmet: Don't use unstable tarball.
     add 84c10c3  gnu: gourmet: Adjust install phase.
     add cfb065f  gnu: Add emacs-boxquote.
     add 479f401  gnu: Add python-pypng.
     add 19568f9  gnu: Add emacs-mwim.
     add 8684575  gnu: ocaml-lwt: Don't use unstable tarball.
     add 4d85a7d  gnu: ocaml-ocplib-endian: Don't use unstable tarball.
     add c8f16c7  gnu: ocaml-ctypes: Don't use unstable tarball.
     add 2fe83ce  gnu: Add emacs-delight.
     add 3450bb8  gnu: Add omnitux.
     add f4167bd  gnu: education.scm: Update copyright line.
     add d823fd9  gnu: Add bruteforce-luks.
     add 87146f3  gnu: lxqt: Correct home page.
     add cd328a7  gnu: Add bcachefs-tools.
     add e572ec3  gnu: iproute2: Update to 5.5.0.
     add 4968ea2  Use HTTPS for liballeg.org.
     add e7c938b  gnu: Add emacs-unkillable-scratch.
     add 07a7ccc  gnu: ode: Properly disable tests when cross-compiling.
     add 9111f97  services: gdm: Disable initial system setup in GDM.
     add 24882d3  gnu: gnome: Re-add gnome-initial-setup.
     add e19e343  gnu: opensmtpd-next: Update to 6.6.2p1 [security fixes].
     add d868261  gnu: godot: Update to 3.1.2.
     add c1bc92c  gnu: godot: Unbundle some dependencies.
     add 18f8e93  gnu: godot: List which third party files to keep.
     add 4e8d111  gnu: mbedtls-apache: Update to 2.16.4.
     add 92ebd8e  gnu: mbedtls-apache: Do not build the static libraries.
     add eae94df  gnu: p11-kit: Update to 0.23.19.
     add 1256ac1  gnu: whois: Update to 5.5.5.
     add d503789  gnu: OpenAL: Update to 1.20.1.
     add 602059e  gnu: hexedit: Make F1 help more reliable.
     new 0895002  Merge branch 'master' into staging

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 build-aux/git-authenticate.scm    |    6 +-
 gnu/packages/audio.scm            |   37 +-
 gnu/packages/bioconductor.scm     |   44 +-
 gnu/packages/bioinformatics.scm   |   38 +-
 gnu/packages/check.scm            |    4 +-
 gnu/packages/cran.scm             |  182 +++---
 gnu/packages/crates-io.scm        |  118 ++--
 gnu/packages/education.scm        |  104 +++-
 gnu/packages/emacs-xyz.scm        |  248 +++++---
 gnu/packages/emulators.scm        |   14 +-
 gnu/packages/file-systems.scm     |   61 +-
 gnu/packages/game-development.scm |   78 ++-
 gnu/packages/hexedit.scm          |   42 +-
 gnu/packages/linux.scm            |   27 +-
 gnu/packages/lxqt.scm             |    2 +-
 gnu/packages/mail.scm             |    9 +-
 gnu/packages/monitoring.scm       |   40 +-
 gnu/packages/music.scm            |   49 +-
 gnu/packages/networking.scm       |    4 +-
 gnu/packages/nutrition.scm        |   18 +-
 gnu/packages/ocaml.scm            | 1132 ++++++++++++++++++++++---------------
 gnu/packages/password-utils.scm   |   33 +-
 gnu/packages/plotutils.scm        |   14 +-
 gnu/packages/python-xyz.scm       |   30 +
 gnu/packages/rust-apps.scm        |   16 +-
 gnu/packages/scheme.scm           |    7 +-
 gnu/packages/skarnet.scm          |   12 +-
 gnu/packages/statistics.scm       |   65 +--
 gnu/packages/terminals.scm        |    7 +
 gnu/packages/text-editors.scm     |    4 +-
 gnu/packages/tls.scm              |   13 +-
 gnu/packages/vim.scm              |   34 ++
 gnu/services/xorg.scm             |    7 +-
 guix/build-system/ocaml.scm       |   20 +-
 guix/build/cargo-build-system.scm |    6 +-
 guix/licenses.scm                 |    2 +-
 36 files changed, 1637 insertions(+), 890 deletions(-)