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03/05: gnu: python-cooler: Update to 0.8.7.
From: |
guix-commits |
Subject: |
03/05: gnu: python-cooler: Update to 0.8.7. |
Date: |
Fri, 17 Apr 2020 09:53:12 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit c55beaecd8c5a36052b628cbd429da9ab7803c8d
Author: Ricardo Wurmus <address@hidden>
AuthorDate: Fri Apr 17 15:49:19 2020 +0200
gnu: python-cooler: Update to 0.8.7.
* gnu/packages/bioinformatics.scm (python-cooler): Update to 0.8.7.
[propagated-inputs]: Add python-asciitree, python-numpy, python-pyyaml, and
python-simplejson.
[native-inputs]: Remove python-nose, python-numpydoc, and python-sphinx; add
python-pytest.
---
gnu/packages/bioinformatics.scm | 16 +++++++++-------
1 file changed, 9 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 73a1fe1..6fcabb6 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13641,32 +13641,34 @@ fasta subsequences.")
(define-public python-cooler
(package
(name "python-cooler")
- (version "0.7.11")
+ (version "0.8.7")
(source
(origin
(method url-fetch)
(uri (pypi-uri "cooler" version))
(sha256
(base32
- "08k5nxnxa6qsbk15z5z0q01n28042k87wi4905hh95rzqib15mhx"))))
+ "01g6gqix9ba27sappz6nfyiwabzrlf8i5fn8kwcz8ra356cq9crp"))))
(build-system python-build-system)
(propagated-inputs
- `(("python-biopython" ,python-biopython)
+ `(("python-asciitree" ,python-asciitree)
+ ("python-biopython" ,python-biopython)
("python-click" ,python-click)
("python-cytoolz" ,python-cytoolz)
("python-dask" ,python-dask)
("python-h5py" ,python-h5py)
("python-multiprocess" ,python-multiprocess)
+ ("python-numpy" ,python-numpy)
("python-pandas" ,python-pandas)
("python-pyfaidx" ,python-pyfaidx)
("python-pypairix" ,python-pypairix)
("python-pysam" ,python-pysam)
- ("python-scipy" ,python-scipy)))
+ ("python-pyyaml" ,python-pyyaml)
+ ("python-scipy" ,python-scipy)
+ ("python-simplejson" ,python-simplejson)))
(native-inputs
`(("python-mock" ,python-mock)
- ("python-nose" ,python-nose)
- ("python-numpydoc" ,python-numpydoc)
- ("python-sphinx" ,python-sphinx)))
+ ("python-pytest" ,python-pytest)))
(home-page "https://github.com/mirnylab/cooler")
(synopsis "Sparse binary format for genomic interaction matrices")
(description