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branch master updated: gnu: Add r-ideoviz.
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guix-commits |
Subject: |
branch master updated: gnu: Add r-ideoviz. |
Date: |
Mon, 27 Apr 2020 04:24:49 -0400 |
This is an automated email from the git hooks/post-receive script.
roelj pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new e8d435f gnu: Add r-ideoviz.
e8d435f is described below
commit e8d435f7a2919e8f05fc3822d1a43f50c6c5cc8a
Author: Roel Janssen <address@hidden>
AuthorDate: Mon Apr 27 10:24:20 2020 +0200
gnu: Add r-ideoviz.
* gnu/packages/bioconductor.scm (r-ideoviz): New variable.
---
gnu/packages/bioconductor.scm | 26 +++++++++++++++++++++++++-
1 file changed, 25 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0fc0d7b..9540de3 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1,6 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus <address@hidden>
-;;; Copyright © 2016, 2017, 2018 Roel Janssen <address@hidden>
+;;; Copyright © 2016, 2017, 2018, 2020 Roel Janssen <address@hidden>
;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <address@hidden>
;;; Copyright © 2019 Simon Tournier <address@hidden>
;;;
@@ -718,6 +718,30 @@ annotations.")
"This is a manifest package for Illumina's EPIC methylation arrays.")
(license license:artistic2.0)))
+(define-public r-ideoviz
+ (package
+ (name "r-ideoviz")
+ (version "1.22.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "IdeoViz" version))
+ (sha256
+ (base32
+ "0rsz6dawrx5qdrypxs2hgihmx3kbpdg1y73h876yxccgdlabvzil"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-iranges" ,r-iranges)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-genomeinfodb" ,r-genomeinfodb)))
+ (home-page "https://bioconductor.org/packages/IdeoViz/")
+ (synopsis "Plots data along a chromosomal ideogram")
+ (description "This package provides functions to plot data associated with
+arbitrary genomic intervals along chromosomal ideogram.")
+ (license license:gpl2)))
+
;; This is a CRAN package, but it depends on r-bsgenome-hsapiens-ucsc-hg19
;; from Bioconductor.
(define-public r-deconstructsigs
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