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branch master updated: gnu: Add r-ideoviz.


From: guix-commits
Subject: branch master updated: gnu: Add r-ideoviz.
Date: Mon, 27 Apr 2020 04:24:49 -0400

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roelj pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
     new e8d435f  gnu: Add r-ideoviz.
e8d435f is described below

commit e8d435f7a2919e8f05fc3822d1a43f50c6c5cc8a
Author: Roel Janssen <address@hidden>
AuthorDate: Mon Apr 27 10:24:20 2020 +0200

    gnu: Add r-ideoviz.
    
    * gnu/packages/bioconductor.scm (r-ideoviz): New variable.
---
 gnu/packages/bioconductor.scm | 26 +++++++++++++++++++++++++-
 1 file changed, 25 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0fc0d7b..9540de3 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1,6 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus <address@hidden>
-;;; Copyright © 2016, 2017, 2018 Roel Janssen <address@hidden>
+;;; Copyright © 2016, 2017, 2018, 2020 Roel Janssen <address@hidden>
 ;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <address@hidden>
 ;;; Copyright © 2019 Simon Tournier <address@hidden>
 ;;;
@@ -718,6 +718,30 @@ annotations.")
      "This is a manifest package for Illumina's EPIC methylation arrays.")
     (license license:artistic2.0)))
 
+(define-public r-ideoviz
+  (package
+    (name "r-ideoviz")
+    (version "1.22.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "IdeoViz" version))
+              (sha256
+               (base32
+                "0rsz6dawrx5qdrypxs2hgihmx3kbpdg1y73h876yxccgdlabvzil"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-biobase" ,r-biobase)
+       ("r-iranges" ,r-iranges)
+       ("r-genomicranges" ,r-genomicranges)
+       ("r-rcolorbrewer" ,r-rcolorbrewer)
+       ("r-rtracklayer" ,r-rtracklayer)
+       ("r-genomeinfodb" ,r-genomeinfodb)))
+    (home-page "https://bioconductor.org/packages/IdeoViz/";)
+    (synopsis "Plots data along a chromosomal ideogram")
+    (description "This package provides functions to plot data associated with
+arbitrary genomic intervals along chromosomal ideogram.")
+    (license license:gpl2)))
+
 ;; This is a CRAN package, but it depends on r-bsgenome-hsapiens-ucsc-hg19
 ;; from Bioconductor.
 (define-public r-deconstructsigs



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