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branch master updated: gnu: Add r-bsgenome-hsapiens-ucsc-hg38.


From: guix-commits
Subject: branch master updated: gnu: Add r-bsgenome-hsapiens-ucsc-hg38.
Date: Mon, 27 Apr 2020 04:44:09 -0400

This is an automated email from the git hooks/post-receive script.

roelj pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
     new 8ce240f  gnu: Add r-bsgenome-hsapiens-ucsc-hg38.
8ce240f is described below

commit 8ce240fdbf05539b0d13f981b0520be5d84e0e61
Author: Roel Janssen <address@hidden>
AuthorDate: Mon Apr 27 10:43:51 2020 +0200

    gnu: Add r-bsgenome-hsapiens-ucsc-hg38.
    
    * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): New 
variable.
---
 gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d74d1cf..66ff611 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -493,6 +493,30 @@ annotations for the genome of the model mouse Mus 
musculus.")
 by UCSC (hg19, February 2009) and stored in Biostrings objects.")
     (license license:artistic2.0)))
 
+(define-public r-bsgenome-hsapiens-ucsc-hg38
+  (package
+    (name "r-bsgenome-hsapiens-ucsc-hg38")
+    (version "1.4.1")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "BSgenome.Hsapiens.UCSC.hg38"
+                                     version 'annotation))
+              (sha256
+               (base32
+                "1ql08pvi4vv0ynvg4qs9kysw1c7s3crkgin6zxvgzqk6fray9mvi"))))
+    (properties
+     `((upstream-name . "BSgenome.Hsapiens.UCSC.hg38")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-bsgenome" ,r-bsgenome)))
+    (home-page
+     "https://www.bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg38/";)
+    (synopsis "Full genome sequences for Homo sapiens")
+    (description
+     "This package provides full genome sequences for Homo sapiens (Human)
+as provided by UCSC (hg38, Dec. 2013) and stored in Biostrings objects.")
+    (license license:artistic2.0)))
+
 (define-public r-ensdb-hsapiens-v75
   (package
     (name "r-ensdb-hsapiens-v75")



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