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branch master updated: gnu: Add r-coverageview.
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guix-commits |
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branch master updated: gnu: Add r-coverageview. |
Date: |
Mon, 27 Apr 2020 04:57:32 -0400 |
This is an automated email from the git hooks/post-receive script.
roelj pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 0c0ef9c gnu: Add r-coverageview.
0c0ef9c is described below
commit 0c0ef9c5a6e54206eb9ca51f242cd95e07406f26
Author: Roel Janssen <address@hidden>
AuthorDate: Mon Apr 27 10:56:07 2020 +0200
gnu: Add r-coverageview.
* gnu/packages/bioconductor.scm (r-coverageview): New variable.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 66ff611..83ac5dc 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1069,6 +1069,33 @@ examples' of Affymetrix data, unlike the artificial
examples included in the
package @code{affy}.")
(license license:gpl2+)))
+(define-public r-coverageview
+ (package
+ (name "r-coverageview")
+ (version "1.24.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "CoverageView" version))
+ (sha256
+ (base32
+ "0s47svs7xnr9jkylq0dxidqrigihdddiprcl0951vjr4w7kmb5nf"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-s4vectors" ,r-s4vectors)
+ ("r-iranges" ,r-iranges)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-genomicalignments" ,r-genomicalignments)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-rsamtools" ,r-rsamtools)))
+ (home-page "https://bioconductor.org/packages/CoverageView/")
+ (synopsis "Coverage visualization package for R")
+ (description "This package provides a framework for the visualization of
+genome coverage profiles. It can be used for ChIP-seq experiments, but it can
+be also used for genome-wide nucleosome positioning experiments or other
+experiment types where it is important to have a framework in order to inspect
+how the coverage distributed across the genome.")
+ (license license:artistic2.0)))
+
(define-public r-curatedtcgadata
(package
(name "r-curatedtcgadata")
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