[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
05/05: gnu: apache-arrow: Update to 0.17.1.
|
From: |
guix-commits |
|
Subject: |
05/05: gnu: apache-arrow: Update to 0.17.1. |
|
Date: |
Tue, 9 Jun 2020 04:44:44 -0400 (EDT) |
civodul pushed a commit to branch master
in repository guix.
commit a50628bbe0fa4ba3835e311098e4fdf7a1d8a29e
Author: Katherine Cox-Buday <cox.katherine.e@gmail.com>
AuthorDate: Tue Jun 2 16:33:36 2020 -0500
gnu: apache-arrow: Update to 0.17.1.
* gnu/packages/databases.scm (apache-arrow): Update to 0.17.1.
* gnu/packages/databases.scm (python-pyarrow): Update to 0.17.1.
* gnu/packages/serialization.scm (python-feather-format): Update to 0.4.1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
---
gnu/packages/databases.scm | 145 ++++++++++++++++++++++++++++-------------
gnu/packages/serialization.scm | 4 +-
2 files changed, 100 insertions(+), 49 deletions(-)
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index c8cbac5..e0634b7 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -88,7 +88,9 @@
#:use-module (gnu packages language)
#:use-module (gnu packages libevent)
#:use-module (gnu packages linux)
+ #:use-module (gnu packages logging)
#:use-module (gnu packages man)
+ #:use-module (gnu packages maths)
#:use-module (gnu packages ncurses)
#:use-module (gnu packages onc-rpc)
#:use-module (gnu packages parallel)
@@ -98,6 +100,7 @@
#:use-module (gnu packages perl-web)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages popt)
+ #:use-module (gnu packages protobuf)
#:use-module (gnu packages python)
#:use-module (gnu packages python-crypto)
#:use-module (gnu packages python-web)
@@ -105,6 +108,8 @@
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages rdf)
#:use-module (gnu packages readline)
+ #:use-module (gnu packages regex)
+ #:use-module (gnu packages rpc)
#:use-module (gnu packages ruby)
#:use-module (gnu packages serialization)
#:use-module (gnu packages sphinx)
@@ -3216,20 +3221,22 @@ Monitor read/write activity on a mongo server
@end table")
(license license:asl2.0)))
+;; There are many wrappers for this in other languages. When touching, please
+;; be sure to ensure all dependencies continue to build.
(define-public apache-arrow
(package
(name "apache-arrow")
- (version "0.10.0")
+ (version "0.17.1")
(source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/apache/arrow";)
- (commit (string-append "apache-arrow-" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "04xkp922b8qrrnpvv9ixxnvk7151n1plzx6aqdff6frn9651zvxs"))))
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/apache/arrow";)
+ (commit (string-append "apache-arrow-" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "02r6yx3yhywzikd3b0vfkjgddhfiriyx2vpm3jf5880wq59x798a"))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f
@@ -3242,91 +3249,135 @@ Monitor read/write activity on a mongo server
(setenv "BOOST_ROOT" (assoc-ref %build-inputs "boost"))
(setenv "BROTLI_HOME" (assoc-ref %build-inputs "brotli"))
(setenv "FLATBUFFERS_HOME" (assoc-ref %build-inputs
"flatbuffers"))
- (setenv "JEMALLOC_HOME" (assoc-ref %build-inputs "jemalloc"))
(setenv "RAPIDJSON_HOME" (assoc-ref %build-inputs "rapidjson"))
#t)))
#:build-type "Release"
#:configure-flags
(list "-DARROW_PYTHON=ON"
-
- ;; Install to PREFIX/lib (the default is
- ;; PREFIX/lib64).
- (string-append "-DCMAKE_INSTALL_LIBDIR="
- (assoc-ref %outputs "out")
+ "-DARROW_GLOG=ON"
+ ;; Parquet options
+ "-DARROW_PARQUET=ON"
+ "-DPARQUET_BUILD_EXECUTABLES=ON"
+ ;; The maintainers disallow using system versions of
+ ;; jemalloc:
+ ;; https://issues.apache.org/jira/browse/ARROW-3507. This
+ ;; is unfortunate because jemalloc increases performance:
+ ;; https://arrow.apache.org/blog/2018/07/20/jemalloc/.
+ "-DARROW_JEMALLOC=OFF"
+
+ ;; The CMake option ARROW_DEPENDENCY_SOURCE is a global
+ ;; option that instructs the build system how to resolve
+ ;; each dependency. SYSTEM = Finding the dependency in
+ ;; system paths using CMake's built-in find_package
+ ;; function, or using pkg-config for packages that do not
+ ;; have this feature
+ "-DARROW_DEPENDENCY_SOURCE=SYSTEM"
+
+ ;; Split output into its component packages.
+ (string-append "-DCMAKE_INSTALL_PREFIX="
+ (assoc-ref %outputs "lib"))
+ (string-append "-DCMAKE_INSTALL_RPATH="
+ (assoc-ref %outputs "lib")
"/lib")
-
- ;; XXX These Guix package offer static
- ;; libraries that are not position independent,
- ;; and ld fails to link them into the arrow .so
- "-DARROW_WITH_SNAPPY=OFF"
- "-DARROW_WITH_ZLIB=OFF"
- "-DARROW_WITH_ZSTD=OFF"
- "-DARROW_WITH_LZ4=OFF"
+ (string-append "-DCMAKE_INSTALL_BINDIR="
+ (assoc-ref %outputs "out")
+ "/bin")
+ (string-append "-DCMAKE_INSTALL_INCLUDEDIR="
+ (assoc-ref %outputs "include")
+ "/share/include")
+
+
+ "-DARROW_WITH_SNAPPY=ON"
+ "-DARROW_WITH_ZLIB=ON"
+ "-DARROW_WITH_ZSTD=ON"
+ "-DARROW_WITH_LZ4=ON"
+ "-DARROW_COMPUTE=ON"
+ "-DARROW_CSV=ON"
+ "-DARROW_DATASET=ON"
+ "-DARROW_FILESYSTEM=ON"
+ "-DARROW_HDFS=ON"
+ "-DARROW_JSON=ON"
+ ;; Arrow Python C++ integration library (required for
+ ;; building pyarrow). This library must be built against
+ ;; the same Python version for which you are building
+ ;; pyarrow. NumPy must also be installed. Enabling this
+ ;; option also enables ARROW_COMPUTE, ARROW_CSV,
+ ;; ARROW_DATASET, ARROW_FILESYSTEM, ARROW_HDFS, and
+ ;; ARROW_JSON.
+ "-DARROW_PYTHON=ON"
;; Building the tests forces on all the
;; optional features and the use of static
;; libraries.
"-DARROW_BUILD_TESTS=OFF"
+ "-DBENCHMARK_ENABLE_GTEST_TESTS=OFF"
+ ;;"-DBENCHMARK_ENABLE_TESTING=OFF"
"-DARROW_BUILD_STATIC=OFF")))
(inputs
`(("boost" ,boost)
- ("rapidjson" ,rapidjson)
("brotli" ,google-brotli)
- ("flatbuffers" ,flatbuffers)
- ("jemalloc" ,jemalloc)
+ ("double-conversion" ,double-conversion)
+ ("snappy" ,snappy)
+ ("gflags" ,gflags)
+ ("glog" ,glog)
+ ("apache-thrift" ,apache-thrift "lib")
+ ("protobuf" ,protobuf)
+ ("rapidjson" ,rapidjson)
+ ("zlib" ,zlib)
+ ("bzip2" ,bzip2)
+ ("lz4" ,lz4)
+ ("zstd" ,zstd "lib")
+ ("re2" ,re2)
+ ("grpc" ,grpc)
("python-3" ,python)
("python-numpy" ,python-numpy)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
+ (outputs '("out" "lib" "include"))
(home-page "https://arrow.apache.org/";)
(synopsis "Columnar in-memory analytics")
(description "Apache Arrow is a columnar in-memory analytics layer
-designed to accelerate big data. It houses a set of canonical in-memory
+designed to accelerate big data. It houses a set of canonical in-memory
representations of flat and hierarchical data along with multiple
-language-bindings for structure manipulation. It also provides IPC and common
+language-bindings for structure manipulation. It also provides IPC and common
algorithm implementations.")
(license license:asl2.0)))
(define-public python-pyarrow
(package
+ (inherit apache-arrow)
(name "python-pyarrow")
- (version "0.10.0")
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/apache/arrow";)
- (commit (string-append "apache-arrow-" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "04xkp922b8qrrnpvv9ixxnvk7151n1plzx6aqdff6frn9651zvxs"))))
(build-system python-build-system)
(arguments
- '(#:tests? #f ; XXX There are no tests in the "python" directory
+ '(#:tests? #f ; XXX There are no tests in the "python" directory
#:phases
(modify-phases %standard-phases
(delete 'build) ; XXX the build is performed again during the install
phase
(add-after 'unpack 'enter-source-directory
(lambda _ (chdir "python") #t))
- (add-after 'unpack 'set-env
+ (add-after 'unpack 'make-git-checkout-writable
(lambda _
- (setenv "ARROW_HOME" (assoc-ref %build-inputs "apache-arrow"))
+ (for-each make-file-writable (find-files "."))
#t)))))
(propagated-inputs
- `(("apache-arrow" ,apache-arrow)
+ `(("apache-arrow" ,apache-arrow "lib")
("python-numpy" ,python-numpy)
("python-pandas" ,python-pandas)
("python-six" ,python-six)))
(native-inputs
`(("cmake" ,cmake-minimal)
+ ("pkg-config" ,pkg-config)
("python-cython" ,python-cython)
("python-pytest" ,python-pytest)
("python-pytest-runner" ,python-pytest-runner)
("python-setuptools-scm" ,python-setuptools-scm)))
+ (outputs '("out"))
(home-page "https://arrow.apache.org/docs/python/";)
(synopsis "Python bindings for Apache Arrow")
- (description "This library provides a Pythonic API wrapper for the
reference
-Arrow C++ implementation, along with tools for interoperability with pandas,
-NumPy, and other traditional Python scientific computing packages.")
+ (description
+ "This library provides a Pythonic API wrapper for the reference Arrow C++
+implementation, along with tools for interoperability with pandas, NumPy, and
+other traditional Python scientific computing packages.")
(license license:asl2.0)))
(define-public python2-pyarrow
diff --git a/gnu/packages/serialization.scm b/gnu/packages/serialization.scm
index bee7a2e..be81715 100644
--- a/gnu/packages/serialization.scm
+++ b/gnu/packages/serialization.scm
@@ -467,14 +467,14 @@ game development and other performance-critical
applications.")
(define-public python-feather-format
(package
(name "python-feather-format")
- (version "0.4.0")
+ (version "0.4.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "feather-format" version))
(sha256
(base32
- "1adivm5w5ji4qv7hq7942vqlk8l2wgw87bdlsia771z14z3zp857"))))
+ "00w9hwz7sj3fkdjc378r066vdy6lpxmn6vfac3qx956k8lvpxxj5"))))
(build-system python-build-system)
(propagated-inputs
`(("python-pandas" ,python-pandas)