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11/296: gnu: r-deseq2: Update to 1.28.1.
From: |
guix-commits |
Subject: |
11/296: gnu: r-deseq2: Update to 1.28.1. |
Date: |
Fri, 12 Jun 2020 19:29:23 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 3d7de4ed829b264acc26e74bc6d4c758e0249611
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Fri Jun 12 15:55:57 2020 +0200
gnu: r-deseq2: Update to 1.28.1.
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.28.1.
[propagated-inputs]: Remove r-hmisc.
[native-inputs]: Add r-knitr.
---
gnu/packages/bioinformatics.scm | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7b382d0..72f7ee6 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -6975,14 +6975,14 @@ high-throughput sequencing experiments.")
(define-public r-deseq2
(package
(name "r-deseq2")
- (version "1.26.0")
+ (version "1.28.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "DESeq2" version))
(sha256
(base32
- "1lmbhznfs8dz9ipd53z4ccwvwxqwzx1ayw56jlrvlsambaj8fash"))))
+ "0xh12c2skr0bbv893p05gvbismkcnqw8zwh7yz4wmycgajfzg2pp"))))
(properties `((upstream-name . "DESeq2")))
(build-system r-build-system)
(propagated-inputs
@@ -6993,13 +6993,14 @@ high-throughput sequencing experiments.")
("r-geneplotter" ,r-geneplotter)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
- ("r-hmisc" ,r-hmisc)
("r-iranges" ,r-iranges)
("r-locfit" ,r-locfit)
("r-rcpp" ,r-rcpp)
("r-rcpparmadillo" ,r-rcpparmadillo)
("r-s4vectors" ,r-s4vectors)
("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/DESeq2")
(synopsis "Differential gene expression analysis")
(description
- 04/296: gnu: Add r-gprofiler2., (continued)
- 04/296: gnu: Add r-gprofiler2., guix-commits, 2020/06/12
- 05/296: gnu: Add r-scatterpie., guix-commits, 2020/06/12
- 06/296: gnu: Add r-v8., guix-commits, 2020/06/12
- 03/296: gnu: node: Build shared library., guix-commits, 2020/06/12
- 07/296: gnu: Add r-dot., guix-commits, 2020/06/12
- 10/296: gnu: r-genefilter: Update to 1.70.0., guix-commits, 2020/06/12
- 08/296: gnu: r-preprocesscore: Update to 1.50.0., guix-commits, 2020/06/12
- 09/296: gnu: r-rgraphviz: Update to 2.32.0., guix-commits, 2020/06/12
- 15/296: gnu: r-gseabase: Update to 1.50.1., guix-commits, 2020/06/12
- 17/296: gnu: r-gostats: Update to 2.54.0., guix-commits, 2020/06/12
- 11/296: gnu: r-deseq2: Update to 1.28.1.,
guix-commits <=
- 12/296: gnu: r-dexseq: Update to 1.34.0., guix-commits, 2020/06/12
- 13/296: gnu: r-annotationforge: Update to 1.30.1., guix-commits, 2020/06/12
- 16/296: gnu: r-category: Update to 2.54.0., guix-commits, 2020/06/12
- 21/296: gnu: r-biocviews: Update to 1.56.0., guix-commits, 2020/06/12
- 22/296: gnu: r-biocstyle: Update to 2.16.0., guix-commits, 2020/06/12
- 24/296: gnu: r-s4vectors: Update to 0.26.1., guix-commits, 2020/06/12
- 14/296: gnu: r-rbgl: Update to 1.64.0., guix-commits, 2020/06/12
- 18/296: gnu: r-shortread: Update to 1.46.0., guix-commits, 2020/06/12
- 19/296: gnu: r-systempiper: Update to 1.22.0., guix-commits, 2020/06/12
- 20/296: gnu: r-grohmm: Update to 1.22.0., guix-commits, 2020/06/12