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90/296: gnu: r-gviz: Update to 1.32.0.
From: |
guix-commits |
Subject: |
90/296: gnu: r-gviz: Update to 1.32.0. |
Date: |
Fri, 12 Jun 2020 19:29:50 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 522da60b294f6e132bb02313aa39f89eb5f349a7
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Fri Jun 12 16:33:07 2020 +0200
gnu: r-gviz: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.32.0.
[propagated-inputs]: Add r-ensembldb.
[native-inputs]: Add r-knitr.
---
gnu/packages/bioinformatics.scm | 7 +++++--
1 file changed, 5 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9861970..71e670a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10679,14 +10679,14 @@ family of feature/genome hypotheses.")
(define-public r-gviz
(package
(name "r-gviz")
- (version "1.30.3")
+ (version "1.32.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "Gviz" version))
(sha256
(base32
- "0c9i26h5czm60n1bxzmdxxpywcj0sig6wcj913pb41mr83bbgra3"))))
+ "0cgkp0ciyy2qykqgh3vzp5mx9b4vsvacjh2jnsj3wldiapzlz08a"))))
(properties `((upstream-name . "Gviz")))
(build-system r-build-system)
(propagated-inputs
@@ -10698,6 +10698,7 @@ family of feature/genome hypotheses.")
("r-biovizbase" ,r-biovizbase)
("r-bsgenome" ,r-bsgenome)
("r-digest" ,r-digest)
+ ("r-ensembldb" ,r-ensembldb)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicfeatures" ,r-genomicfeatures)
@@ -10711,6 +10712,8 @@ family of feature/genome hypotheses.")
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-xvector" ,r-xvector)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/Gviz")
(synopsis "Plotting data and annotation information along genomic
coordinates")
(description
- 99/296: gnu: r-scater: Update to 1.16.1., (continued)
- 99/296: gnu: r-scater: Update to 1.16.1., guix-commits, 2020/06/12
- 102/296: gnu: r-ideoviz: Update to 1.24.0., guix-commits, 2020/06/12
- 105/296: gnu: r-biocversion: Update to 3.11.1., guix-commits, 2020/06/12
- 107/296: gnu: r-affycomp: Update to 1.64.0., guix-commits, 2020/06/12
- 82/296: gnu: r-organismdbi: Update to 1.30.0., guix-commits, 2020/06/12
- 87/296: gnu: r-erma: Update to 1.4.0., guix-commits, 2020/06/12
- 93/296: gnu: r-fithic: Update to 1.14.0., guix-commits, 2020/06/12
- 95/296: gnu: r-hdf5array: Update to 1.16.0., guix-commits, 2020/06/12
- 98/296: gnu: r-singlecellexperiment: Update to 1.10.1., guix-commits, 2020/06/12
- 100/296: gnu: r-scran: Update to 1.16.0., guix-commits, 2020/06/12
- 90/296: gnu: r-gviz: Update to 1.32.0.,
guix-commits <=
- 91/296: gnu: r-gwascat: Update to 2.20.1., guix-commits, 2020/06/12
- 94/296: gnu: r-hitc: Update to 1.32.0., guix-commits, 2020/06/12
- 96/296: gnu: r-rhdf5lib: Update to 1.10.0., guix-commits, 2020/06/12
- 97/296: gnu: r-beachmat: Update to 2.4.0., guix-commits, 2020/06/12
- 104/296: gnu: r-cummerbund: Update to 2.30.0., guix-commits, 2020/06/12
- 108/296: gnu: r-affycompatible: Update to 1.48.0., guix-commits, 2020/06/12
- 112/296: gnu: r-annotate: Update to 1.66.0., guix-commits, 2020/06/12
- 122/296: gnu: r-graph: Update to 1.66.0., guix-commits, 2020/06/12
- 110/296: gnu: r-affycoretools: Update to 1.60.1., guix-commits, 2020/06/12
- 114/296: gnu: r-regioner: Update to 1.20.0., guix-commits, 2020/06/12