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branch master updated: gnu: express: Update to 1.5.3.
From: |
guix-commits |
Subject: |
branch master updated: gnu: express: Update to 1.5.3. |
Date: |
Mon, 22 Jun 2020 03:07:58 -0400 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new acba72b gnu: express: Update to 1.5.3.
acba72b is described below
commit acba72b9146edf4b12aa3625ff2cdcd4cf513b6d
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Mon Jun 22 09:06:53 2020 +0200
gnu: express: Update to 1.5.3.
* gnu/packages/bioinformatics.scm (express): Update to 1.5.3.
[source]: Fetch from Github.
[arguments]: Add phase "remove-update-check".
---
gnu/packages/bioinformatics.scm | 20 +++++++++++++-------
1 file changed, 13 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 95f8b16..a2d83e3 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3050,16 +3050,16 @@ dynamic programming or a variety of heuristics.")
(define-public express
(package
(name "express")
- (version "1.5.1")
+ (version "1.5.3")
(source (origin
- (method url-fetch)
- (uri
- (string-append
- "http://bio.math.berkeley.edu/eXpress/downloads/express-"
- version "/express-" version "-src.tgz"))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/adarob/eXpress.git")
+ (commit version)))
+ (file-name (git-file-name name version))
(sha256
(base32
- "03rczxd0gjp2l1jxcmjfmf5j94j77zqyxa6x063zsc585nj40n0c"))))
+ "18nb22n7x820fzjngf4qgyb3mspqkw7xyk7v7s5ps6wfrd8qwscb"))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f ;no "check" target
@@ -3076,6 +3076,12 @@ dynamic programming or a variety of heuristics.")
(("\\$\\{CMAKE_CURRENT_SOURCE_DIR\\}/\\.\\./bamtools/lib")
(string-append (assoc-ref inputs "bamtools") "/lib"))
(("libprotobuf.a") "libprotobuf.so"))
+ #t))
+ (add-after 'unpack 'remove-update-check
+ (lambda _
+ (substitute* "src/main.cpp"
+ (("#include \"update_check.h\"") "")
+ (("check_version\\(PACKAGE_VERSION\\);") ""))
#t)))))
(inputs
`(("boost" ,boost)
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