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branch master updated: gnu: Add r-clusterexperiment.
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guix-commits |
Subject: |
branch master updated: gnu: Add r-clusterexperiment. |
Date: |
Wed, 26 May 2021 17:54:29 -0400 |
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roelj pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 2fc74f3 gnu: Add r-clusterexperiment.
2fc74f3 is described below
commit 2fc74f3176f0aae1269ba9eb754f8d9eb7c3a848
Author: Roel Janssen <roel@gnu.org>
AuthorDate: Wed May 26 23:54:14 2021 +0200
gnu: Add r-clusterexperiment.
* gnu/packages/bioconductor.scm (r-clusterexperiment): New variable.
---
gnu/packages/bioconductor.scm | 46 +++++++++++++++++++++++++++++++++++++++++++
1 file changed, 46 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 39f2a81..025faad 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5293,6 +5293,52 @@ All the visualization methods are developed based on
ggplot2 graphics.")
profiles (GO and KEGG) of gene and gene clusters.")
(license license:artistic2.0)))
+(define-public r-clusterexperiment
+ (package
+ (name "r-clusterexperiment")
+ (version "2.10.1")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "clusterExperiment" version))
+ (sha256
+ (base32
+ "04n3lcm7dh07sjkzyv83m55mx3lz0lkcy8yq9hi0zywqyrhyzz7z"))))
+ (build-system r-build-system)
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (propagated-inputs
+ `(("r-ape" ,r-ape)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-cluster" ,r-cluster)
+ ("r-delayedarray" ,r-delayedarray)
+ ("r-edger" ,r-edger)
+ ("r-hdf5array" ,r-hdf5array)
+ ("r-howmany" ,r-howmany)
+ ("r-kernlab" ,r-kernlab)
+ ("r-limma" ,r-limma)
+ ("r-locfdr" ,r-locfdr)
+ ("r-matrix" ,r-matrix)
+ ("r-matrixstats" ,r-matrixstats)
+ ("r-mbkmeans" ,r-mbkmeans)
+ ("r-nmf" ,r-nmf)
+ ("r-phylobase" ,r-phylobase)
+ ("r-pracma" ,r-pracma)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rspectra" ,r-rspectra)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-scales" ,r-scales)
+ ("r-singlecellexperiment" ,r-singlecellexperiment)
+ ("r-stringr" ,r-stringr)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-zinbwave" ,r-zinbwave)))
+ (home-page "https://bioconductor.org/packages/clusterExperiment/")
+ (synopsis "Compare clusterings for single-cell sequencing")
+ (description "This package provides functionality for running and comparing
+many different clusterings of single-cell sequencing data or other large mRNA
+expression data sets.")
+ (license license:artistic2.0)))
+
(define-public r-mlinterfaces
(package
(name "r-mlinterfaces")
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