53/54: gnu: r-spp: Move to (gnu packages bioconductor).

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit a6e7afd4d55cc790aacbda64a327cb9f38a0d0f6
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Mon May 31 15:53:20 2021 +0200

    gnu: r-spp: Move to (gnu packages bioconductor).
    
    * gnu/packages/bioinformatics.scm (r-spp): Move from here...
    * gnu/packages/bioconductor.scm (r-spp): ...to here.
---
 gnu/packages/bioconductor.scm   | 26 ++++++++++++++++++++++++++
 gnu/packages/bioinformatics.scm | 24 ------------------------
 2 files changed, 26 insertions(+), 24 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ba2bffe..5f594b8 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -13163,6 +13163,32 @@ network models for a given data set, where these 
models are used to identify
 statistical dependencies in messy, complex data.")
     (license license:gpl2+)))
 
+;; This is a CRAN package, but it depends on r-rsamtools, which is a
+;; Bioconductor package.
+(define-public r-spp
+  (package
+    (name "r-spp")
+    (version "1.16.0")
+    (source (origin
+              (method url-fetch)
+              (uri (cran-uri "spp" version))
+              (sha256
+               (base32
+                "08zxxgyp0h6733b08jmml7k4rhfd3mi5dda3jrzid0s184y0z29w"))))
+    (build-system r-build-system)
+    (inputs
+     `(("zlib" ,zlib)))
+    (propagated-inputs
+     `(("r-bh" ,r-bh)
+       ("r-catools" ,r-catools)
+       ("r-rcpp" ,r-rcpp)
+       ("r-rsamtools" ,r-rsamtools)))
+    (home-page "https://cran.r-project.org/web/packages/spp/";)
+    (synopsis "ChIP-Seq processing pipeline")
+    (description "This package provides tools for analysis of ChIP-seq and
+other functional sequencing data.")
+    (license license:gpl2)))
+
 (define-public r-pathview
   (package
     (name "r-pathview")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a7ff938..27e86b0 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7952,30 +7952,6 @@ including VCF header and contents in RDF and JSON.")
     (home-page "https://github.com/vcflib/bio-vcf";)
     (license license:expat)))
 
-(define-public r-spp
-  (package
-    (name "r-spp")
-    (version "1.16.0")
-    (source (origin
-              (method url-fetch)
-              (uri (cran-uri "spp" version))
-              (sha256
-               (base32
-                "08zxxgyp0h6733b08jmml7k4rhfd3mi5dda3jrzid0s184y0z29w"))))
-    (build-system r-build-system)
-    (inputs
-     `(("zlib" ,zlib)))
-    (propagated-inputs
-     `(("r-bh" ,r-bh)
-       ("r-catools" ,r-catools)
-       ("r-rcpp" ,r-rcpp)
-       ("r-rsamtools" ,r-rsamtools)))
-    (home-page "https://cran.r-project.org/web/packages/spp/";)
-    (synopsis "ChIP-Seq processing pipeline")
-    (description "This package provides tools for analysis of ChIP-seq and
-other functional sequencing data.")
-    (license license:gpl2)))
-
 (define-public r-phantompeakqualtools
   (let ((commit "8d2b2d18c686d894ef5908b37da7adf72a07ef42")
         (revision "1"))