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08/13: gnu: Add nanosv.
From: |
guix-commits |
Subject: |
08/13: gnu: Add nanosv. |
Date: |
Wed, 21 Jul 2021 07:52:05 -0400 (EDT) |
lbraun pushed a commit to branch master
in repository guix.
commit 690df95d1aafa40143d0fe9989021af22e845029
Author: Lars-Dominik Braun <lars@6xq.net>
AuthorDate: Tue Jul 20 13:50:23 2021 +0200
gnu: Add nanosv.
* gnu/packages/bioinformatics.scm (nanosv): New variable.
---
gnu/packages/bioinformatics.scm | 23 +++++++++++++++++++++++
1 file changed, 23 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6aaee38..7dcc6da 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14637,3 +14637,26 @@ for the analysis and visualization of raw nanopore
signal.")
(description "This package provides a @acronym{VCF,Variant Call Format}
parser for Python.")
(license license:expat)))
+
+(define-public nanosv
+ (package
+ (name "nanosv")
+ (version "1.2.4")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "NanoSV" version))
+ (sha256
+ (base32
+ "1wl2daj0bwrl8fx5xi8j8hfs3mp3vg3qycy66538n032v1qkc6xg"))))
+ (build-system python-build-system)
+ (inputs
+ `(("python-configparser" ,python-configparser)
+ ("python-pysam" ,python-pysam)
+ ("python-pyvcf" ,python-pyvcf)))
+ (home-page "https://github.com/mroosmalen/nanosv")
+ (synopsis "Structural variation detection tool for Oxford Nanopore data.")
+ (description "NanoSV is a software package that can be used to identify
+structural genomic variations in long-read sequencing data, such as data
+produced by Oxford Nanopore Technologies’ MinION, GridION or PromethION
+instruments, or Pacific Biosciences RSII or Sequel sequencers.")
+ (license license:expat)))
- branch master updated (ce27cde -> 403a689), guix-commits, 2021/07/21
- 02/13: gnu: Add r-naniar., guix-commits, 2021/07/21
- 01/13: gnu: Add r-norm., guix-commits, 2021/07/21
- 04/13: gnu: Add r-rmisc., guix-commits, 2021/07/21
- 07/13: gnu: Add python-pyvcf., guix-commits, 2021/07/21
- 08/13: gnu: Add nanosv.,
guix-commits <=
- 03/13: gnu: Add r-glinternet., guix-commits, 2021/07/21
- 11/13: gnu: Add python-bash-kernel., guix-commits, 2021/07/21
- 13/13: gnu: Add python-sparqlkernel., guix-commits, 2021/07/21
- 06/13: gnu: checkm: Rename and update to 1.1.3., guix-commits, 2021/07/21
- 12/13: gnu: Add python-sparqlwrapper., guix-commits, 2021/07/21
- 10/13: gnu: Add r-battenberg., guix-commits, 2021/07/21
- 05/13: gnu: Add tombo., guix-commits, 2021/07/21
- 09/13: gnu: Add r-ascat., guix-commits, 2021/07/21