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branch master updated: gnu: Add r-ciara.


From: guix-commits
Subject: branch master updated: gnu: Add r-ciara.
Date: Tue, 09 Aug 2022 04:53:49 -0400

This is an automated email from the git hooks/post-receive script.

rekado pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
     new 2efc787811 gnu: Add r-ciara.
2efc787811 is described below

commit 2efc787811a2c4586b763aeed319cb3777e7aa37
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Tue Aug 9 10:45:05 2022 +0200

    gnu: Add r-ciara.
    
    * gnu/packages/bioconductor.scm (r-ciara): New variable.
---
 gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index fd9ff0c678..1bb8c0d406 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -11989,6 +11989,30 @@ genes in the gene-set that are ranked above the 
leading edge).")
      "This package provides a pipeline for analysing Capture Hi-C data.")
     (license license:artistic2.0)))
 
+;; This is a CRAN package, but it depends on Bioconductor packages, so we put
+;; it here.
+(define-public r-ciara
+  (package
+    (name "r-ciara")
+    (version "0.1.0")
+    (source (origin
+              (method url-fetch)
+              (uri (cran-uri "CIARA" version))
+              (sha256
+               (base32
+                "0nr7wks9231326x0lhpbh824c6vcb5hr5jn89s9bmg9mci907bsf"))))
+    (properties `((upstream-name . "CIARA")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-biobase r-ggplot2 r-ggraph r-magrittr))
+    (native-inputs (list r-knitr))
+    (home-page "https://cran.r-project.org/package=CIARA";)
+    (synopsis "Cluster-independent algorithm for rare cell types 
identification")
+    (description
+     "This is a package to support identification of markers of rare cell
+types by looking at genes whose expression is confined in small regions of the
+expression space.")
+    (license license:artistic2.0)))
+
 (define-public r-cicero
   (package
     (name "r-cicero")



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