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branch master updated: gnu: Add r-milor.
From: |
guix-commits |
Subject: |
branch master updated: gnu: Add r-milor. |
Date: |
Wed, 31 Aug 2022 17:10:42 -0400 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 3bf7bdccee gnu: Add r-milor.
3bf7bdccee is described below
commit 3bf7bdccee02bad983ce83d540d69abc13a17eda
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Wed Aug 31 23:06:25 2022 +0200
gnu: Add r-milor.
* gnu/packages/bioconductor.scm (r-milor): New variable.
---
gnu/packages/bioconductor.scm | 48 +++++++++++++++++++++++++++++++++++++++++++
1 file changed, 48 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 2a3776e8b5..b137232966 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8697,6 +8697,54 @@ to identify differentially methylated regions in
epigenetic epidemiology
studies.")
(license license:artistic2.0)))
+(define-public r-milor
+ (package
+ (name "r-milor")
+ (version "1.4.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "miloR" version))
+ (sha256
+ (base32
+ "1jz9p3grnczx0bpdw6j64x21in8zgm3qy19hmm296har2rx9m5zs"))))
+ (properties `((upstream-name . "miloR")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biocgenerics
+ r-biocneighbors
+ r-biocparallel
+ r-biocsingular
+ r-cowplot
+ r-dplyr
+ r-edger
+ r-ggbeeswarm
+ r-ggplot2
+ r-ggraph
+ r-ggrepel
+ r-gtools
+ r-igraph
+ r-irlba
+ r-limma
+ r-matrix
+ r-matrixstats
+ r-patchwork
+ r-rcolorbrewer
+ r-s4vectors
+ r-singlecellexperiment
+ r-stringr
+ r-summarizedexperiment
+ r-tibble
+ r-tidyr))
+ (native-inputs (list r-knitr))
+ (home-page "https://marionilab.github.io/miloR")
+ (synopsis "Differential neighbourhood abundance testing on a graph")
+ (description
+ "Milo performs single-cell differential abundance testing. Cell states
+are modelled as representative neighbourhoods on a nearest neighbour graph.
+Hypothesis testing is performed using a negative bionomial generalized linear
+model.")
+ (license license:gpl3)))
+
(define-public r-minfi
(package
(name "r-minfi")
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