02/02: gnu: Add r-anvil.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit ac32f93df36f1908c3d90c28704e3b2bf9c91c36
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Tue Jan 17 14:18:23 2023 +0100

    gnu: Add r-anvil.
    
    * gnu/packages/bioconductor.scm (r-anvil): New variable.
---
 gnu/packages/bioconductor.scm | 41 +++++++++++++++++++++++++++++++++++++++++
 1 file changed, 41 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 420940ff21..711b988e7f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2464,6 +2464,47 @@ Powerful interactive and dynamic figures generated by 
animalcules enable users
 to understand their data better and discover new insights.")
     (license license:artistic2.0)))
 
+(define-public r-anvil
+  (package
+    (name "r-anvil")
+    (version "1.10.1")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "AnVIL" version))
+              (sha256
+               (base32
+                "0iqsffkrxv28g9cddx2w05f2dbscwxhh6bpizwa8xaxhvn5bcpsv"))))
+    (properties `((upstream-name . "AnVIL")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biocmanager
+           r-dplyr
+           r-dt
+           r-futile-logger
+           r-htmltools
+           r-httr
+           r-jsonlite
+           r-miniui
+           r-rapiclient
+           r-rlang
+           r-shiny
+           r-tibble
+           r-tidyr
+           r-tidyselect))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/AnVIL";)
+    (synopsis "Provides access to AnVIL, Terra, Leonardo and other projects")
+    (description
+     "The AnVIL is a cloud computing resource developed in part by the
+National Human Genome Research Institute.  The AnVIL package provides end-user
+and developer functionality.  AnVIL provides fast binary package installation,
+utilities for working with Terra/AnVIL table and data resources, and
+convenient functions for file movement to and from Google cloud storage.  For
+developers, AnVIL provides programatic access to the Terra, Leonardo, Rawls,
+Dockstore, and Gen3 RESTful programming interface, including helper functions
+to transform JSON responses to formats more amenable to manipulation in R.")
+    (license license:artistic2.0)))
+
 (define-public r-aldex2
   (package
     (name "r-aldex2")