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branch master updated: gnu: Add r-psupertime.
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guix-commits |
Subject: |
branch master updated: gnu: Add r-psupertime. |
Date: |
Fri, 03 Feb 2023 10:57:38 -0500 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new a60c750eec gnu: Add r-psupertime.
a60c750eec is described below
commit a60c750eec73a2030b08b32af3b9f435c7ecca54
Author: Navid Afkhami <navid.afkhami@mdc-berlin.de>
AuthorDate: Fri Feb 3 14:44:02 2023 +0100
gnu: Add r-psupertime.
* gnu/packages/bioinformatics.scm (r-psupertime): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
---
gnu/packages/bioinformatics.scm | 46 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 46 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1da464f3c5..656eb7f13a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8258,6 +8258,52 @@ doublet-detection methods. In addition, this tool is
used for execution and
benchmark of those eight mentioned methods.")
(license license:gpl3+))))
+(define-public r-psupertime
+ (let ((commit "73825a28d3bd9bc881c15ee0c4c218eec1c9c207")
+ (revision "1"))
+ (package
+ (name "r-psupertime")
+ (version (git-version "0.2.6" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/wmacnair/psupertime")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "00h1r3ffz6m9dwcgkvyki8405b059qn6mnjsd8d76a1rabaf2vfh"))))
+ (properties `((upstream-name . "psupertime")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-cowplot
+ r-data-table
+ r-fastcluster
+ r-forcats
+ r-ggplot2
+ r-glmnet
+ r-knitr
+ r-matrix
+ r-rcolorbrewer
+ r-scales
+ r-scran
+ r-singlecellexperiment
+ r-stringr
+ r-summarizedexperiment
+ r-topgo))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/wmacnair/psupertime")
+ (synopsis
+ "Psupertime is supervised pseudotime for single cell RNAseq data")
+ (description
+ "Psupertime is supervised pseudotime for single cell RNAseq data. It
+uses single cell RNAseq data, where the cells have a known ordering. This
+ordering helps to identify a small number of genes which place cells in that
+known order. It can be used for discovery of relevant genes, for
+identification of subpopulations, and characterization of further unknown or
+differently labelled data.")
+ (license license:gpl3))))
+
(define-public r-pando
(package
(name "r-pando")
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