branch master updated: Revert "gnu: Add bitmapperbs."

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rekado pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
     new a083a9b512 Revert "gnu: Add bitmapperbs."
a083a9b512 is described below

commit a083a9b512b695f5a5c7bca7d5a19dda97bd33b9
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Tue Feb 7 15:36:21 2023 +0100

    Revert "gnu: Add bitmapperbs."
    
    This reverts commit f55cc9cb0fb6c5dd56196009681e042c1aef415d.
    This commit was prematurely pushed.
---
 gnu/packages/bioinformatics.scm | 51 -----------------------------------------
 1 file changed, 51 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 782dd6bdd8..ef1e7ae988 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -512,57 +512,6 @@ BED, GFF/GTF, VCF.")
     (inputs
      (list samtools zlib))))
 
-(define-public bitmapperbs
-  (package
-    (name "bitmapperbs")
-    (version "1.0.2.3")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                    (url "https://github.com/chhylp123/BitMapperBS/";)
-                    (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "02ksssfnvmpskld0a2016smfz5nrzm3d90v8974f3cpzywckvp8v"))
-              (modules '((guix build utils)))
-              (snippet '(begin
-                     (delete-file-recursively "libdivsufsort-2.0.1")
-                     (delete-file-recursively "pSAscan-0.1.0")))))
-                     ;;this package bundles a modified copy of htslib, so we 
cannot unbundle it
-    (build-system gnu-build-system)
-    (arguments
-     (list
-      #:tests? #false
-      #:make-flags '(list "bitmapperBS")
-      #:phases
-      #~(modify-phases %standard-phases
-         (replace 'install
-          (lambda _
-             (install-file "bitmapperBS"
-                (string-append #$output "/bin/"))))
-         #;(add-after 'unpack 'fix-build-system
-           (lambda _
-             (substitute* "Makefile"
-               (("-Wl,-rpath=htslib_aim/lib") "")
-              #;(("^HTSLIB_INFO.*") ""))))
-         (add-after 'unpack 'patch-references-to-psascan
-           (lambda* (#:key inputs #:allow-other-keys)
-             (substitute* "Makefile"
-               (("\"(./)?psascan" pre all)
-                (string-append "\"" pre (search-input-file inputs 
"/bin/psascan"))))))
-         (delete 'configure))))
-    (inputs
-     (list libdivsufsort
-           psascan
-           zlib))
-    (home-page "https://github.com/chhylp123/BitMapperBS/";)
-    (synopsis "read aligner for whole-genome bisulfite sequencing")
-    (description
-     "BitMapperBS is memory-efficient aligner that 
-is designed for WGBS reads from directional protocol.")
-    (license license:gpl3+)))
-
 (define-public cellsnp-lite
   ;; Last release is from November 2021 and does not contain fixes.
   (let ((commit "0885d746b0b1ea65c8ef92f8943ca7669ca9734a")