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branch master updated: gnu: Add python-scrublet.
From: |
guix-commits |
Subject: |
branch master updated: gnu: Add python-scrublet. |
Date: |
Thu, 09 Feb 2023 05:05:58 -0500 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 4d35a5e2b6 gnu: Add python-scrublet.
4d35a5e2b6 is described below
commit 4d35a5e2b6486e24bb74665ab6a65ca0cfd0b475
Author: Navid Afkhami <navid.afkhami@mdc-berlin.de>
AuthorDate: Thu Feb 9 09:12:34 2023 +0100
gnu: Add python-scrublet.
* gnu/packages/bioinformatics.scm (python-scrublet): New variable.
---
gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 055c8ca47b..fdf52c5851 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3459,6 +3459,35 @@ and record oriented data modeling and the Semantic Web.")
resources for bioinformatics.")
(license license:bsd-3)))
+(define-public python-scrublet
+ (package
+ (name "python-scrublet")
+ (version "0.2.3")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "scrublet" version))
+ (sha256
+ (base32
+ "0fk5pwk12yz9wpvwkl6j2l2g28f3x35b9r9n5bw6f0i9f0qgd191"))))
+ (build-system pyproject-build-system)
+ (arguments '(#:tests? #false)) ;there are none
+ (propagated-inputs
+ (list python-annoy
+ python-cython
+ python-matplotlib
+ python-numba
+ python-numpy
+ python-pandas
+ python-scikit-image
+ python-scikit-learn
+ python-scipy
+ python-umap-learn))
+ (home-page "https://github.com/swolock/scrublet")
+ (synopsis "Tool to indentify and remove doublets in single-cell data")
+ (description "This package provides a tool for identifying and removing
+doublets in single-cell RNA-seq data.")
+ (license license:expat)))
+
(define-public cwltool
(package
(name "cwltool")
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