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Re: [PATCH] Fix jellyfish on non-x86_64
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From: |
Andreas Enge |
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Subject: |
Re: [PATCH] Fix jellyfish on non-x86_64 |
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Date: |
Sun, 28 Feb 2016 00:31:17 +0100 |
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User-agent: |
Mutt/1.5.24 (2015-08-30) |
Hello,
on armhf, I get lots of errors such as these:
unit_tests/test_mer_dna.cc: In instantiation of ‘void
{anonymous}::MerDNA_GetBits_Test<gtest_TypeParam_>::TestBody() [with
gtest_TypeParam_ =
{anonymous}::VTC<jellyfish::mer_dna_ns::mer_base_dynamic<long long unsigned
int>, 1>]’:
unit_tests/test_mer_dna.cc:529:1: required from here
unit_tests/test_mer_dna.cc:464:96: error: no matching function for call to
‘min(long unsigned int, unsigned int)’
unit_tests/test_mer_dna.cc:464:96: note: candidates are:
In file included from
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_tree.h:61:0,
from
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/map:60,
from unit_tests/test_mer_dna.cc:20:
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algobase.h:194:5:
note: template<class _Tp> const _Tp& std::min(const _Tp&, const _Tp&)
min(const _Tp& __a, const _Tp& __b)
^
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algobase.h:194:5:
note: template argument deduction/substitution failed:
unit_tests/test_mer_dna.cc:464:96: note: deduced conflicting types for
parameter ‘const _Tp’ (‘long unsigned int’ and ‘unsigned int’)
std::min(this->GetParam().size() - start, 8 * sizeof(typename
TypeParam::Type::base_type));
^
In file included from
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_tree.h:61:0,
from
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/map:60,
from unit_tests/test_mer_dna.cc:20:
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algobase.h:240:5:
note: template<class _Tp, class _Compare> const _Tp& std::min(const _Tp&,
const _Tp&, _Compare)
min(const _Tp& __a, const _Tp& __b, _Compare __comp)
^
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algobase.h:240:5:
note: template argument deduction/substitution failed:
unit_tests/test_mer_dna.cc:464:96: note: deduced conflicting types for
parameter ‘const _Tp’ (‘long unsigned int’ and ‘unsigned int’)
std::min(this->GetParam().size() - start, 8 * sizeof(typename
TypeParam::Type::base_type));
^
In file included from
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/algorithm:62:0,
from ./include/jellyfish/misc.hpp:34,
from ./include/jellyfish/mer_dna.hpp:33,
from unit_tests/test_mer_dna.cc:24:
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algo.h:3439:5:
note: template<class _Tp> _Tp std::min(std::initializer_list<_Tp>)
min(initializer_list<_Tp> __l)
^
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algo.h:3439:5:
note: template argument deduction/substitution failed:
unit_tests/test_mer_dna.cc:464:96: note: mismatched types
‘std::initializer_list<_Tp>’ and ‘long unsigned int’
std::min(this->GetParam().size() - start, 8 * sizeof(typename
TypeParam::Type::base_type));
^
In file included from
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/algorithm:62:0,
from ./include/jellyfish/misc.hpp:34,
from ./include/jellyfish/mer_dna.hpp:33,
from unit_tests/test_mer_dna.cc:24:
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algo.h:3444:5:
note: template<class _Tp, class _Compare> _Tp
std::min(std::initializer_list<_Tp>, _Compare)
min(initializer_list<_Tp> __l, _Compare __comp)
^
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algo.h:3444:5:
note: template argument deduction/substitution failed:
unit_tests/test_mer_dna.cc:464:96: note: mismatched types
‘std::initializer_list<_Tp>’ and ‘long unsigned int’
std::min(this->GetParam().size() - start, 8 * sizeof(typename
TypeParam::Type::base_type));
^
unit_tests/test_mer_dna.cc: In instantiation of ‘void
{anonymous}::MerDNA_GetBits_Test<gtest_TypeParam_>::TestBody() [with
gtest_TypeParam_ =
{anonymous}::VTC<jellyfish::mer_dna_ns::mer_base_dynamic<long long unsigned
int>, 0>]’:
unit_tests/test_mer_dna.cc:529:1: required from here
unit_tests/test_mer_dna.cc:464:96: error: no matching function for call to
‘min(long unsigned int, unsigned int)’
unit_tests/test_mer_dna.cc:464:96: note: candidates are:
In file included from
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_tree.h:61:0,
from
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/map:60,
from unit_tests/test_mer_dna.cc:20:
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algobase.h:194:5:
note: template<class _Tp> const _Tp& std::min(const _Tp&, const _Tp&)
min(const _Tp& __a, const _Tp& __b)
^
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algobase.h:194:5:
note: template argument deduction/substitution failed:
unit_tests/test_mer_dna.cc:464:96: note: deduced conflicting types for
parameter ‘const _Tp’ (‘long unsigned int’ and ‘unsigned int’)
std::min(this->GetParam().size() - start, 8 * sizeof(typename
TypeParam::Type::base_type));
^
In file included from
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_tree.h:61:0,
from
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/map:60,
from unit_tests/test_mer_dna.cc:20:
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algobase.h:240:5:
note: template<class _Tp, class _Compare> const _Tp& std::min(const _Tp&,
const _Tp&, _Compare)
min(const _Tp& __a, const _Tp& __b, _Compare __comp)
^
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algobase.h:240:5:
note: template argument deduction/substitution failed:
unit_tests/test_mer_dna.cc:464:96: note: deduced conflicting types for
parameter ‘const _Tp’ (‘long unsigned int’ and ‘unsigned int’)
std::min(this->GetParam().size() - start, 8 * sizeof(typename
TypeParam::Type::base_type));
^
In file included from
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/algorithm:62:0,
from ./include/jellyfish/misc.hpp:34,
from ./include/jellyfish/mer_dna.hpp:33,
from unit_tests/test_mer_dna.cc:24:
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algo.h:3439:5:
note: template<class _Tp> _Tp std::min(std::initializer_list<_Tp>)
min(initializer_list<_Tp> __l)
^
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algo.h:3439:5:
note: template argument deduction/substitution failed:
unit_tests/test_mer_dna.cc:464:96: note: mismatched types
‘std::initializer_list<_Tp>’ and ‘long unsigned int’
std::min(this->GetParam().size() - start, 8 * sizeof(typename
TypeParam::Type::base_type));
^
In file included from
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/algorithm:62:0,
from ./include/jellyfish/misc.hpp:34,
from ./include/jellyfish/mer_dna.hpp:33,
from unit_tests/test_mer_dna.cc:24:
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algo.h:3444:5:
note: template<class _Tp, class _Compare> _Tp
std::min(std::initializer_list<_Tp>, _Compare)
min(initializer_list<_Tp> __l, _Compare __comp)
Is there maybe an assumption of 64bit?
Andreas