Re: [PATCH 2/3] gnu: Add python-pyxb.

[Ben Woodcroft]

On 24/09/16 01:56, Marius Bakke wrote:
> Ben Woodcroft <address@hidden> writes:
>
> > > > Also, I notice that pysam bundles htslib, bcftools and samtools C code.
> > > > Hopefully it should be straightforward enough to remove htslib as there
> > > > are install instructions, I'm not sure about the other two. This
> > > > shouldn't block the patch here, but would you mind taking a look?
> > > > http://pysam.readthedocs.io/en/latest/installation.html#installation
> > > I had a go at this, and also enabled tests since I was reading the build
> > > system anyway. Samtools and bcftools does not seem possible to un-bundle
> > > at this time, but htslib was straightforward.
> > OK. I don't think it needs to be propagated though, right? Also, would
> > you mind separating the change to modify-phases syntax and unbundling of
> > htslib into two patches please? Other than that this whole series LGTM.
> Modify-phases is now a separate patch.
Thanks.

> Htslib is propagated because it
> is included by the installed samtools and bcftools headers; at least one
> of pysams dependencies failed to build when it was a regular input.
Ah, I see. Can this be avoided with patchelf?
ben